View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10357_high_1 (Length: 582)
Name: NF10357_high_1
Description: NF10357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10357_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 48 - 574
Target Start/End: Original strand, 44320763 - 44321290
Alignment:
| Q |
48 |
tgaatgctttggtgcccaactagttggaacagatttccaacgtctcattcgacctataataatggactattgttgtttctttcttatgatatttaaatga |
147 |
Q |
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| T |
44320763 |
tgaatgctttggtgcccaactagttggaacagatttccaacgtctcattcgacctataataatggactattgttgtttctttcttatgatatttaaatga |
44320862 |
T |
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| Q |
148 |
taattataatatgtattcataatatatcgtacnnnnnnnggtaactatgtctatatgattggcgtgaagtattctccgacttttgccgaacactaatttc |
247 |
Q |
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| T |
44320863 |
taattataatatgtattcataatatatcgtactttttttggtaactatgtctatatgattgacgtgaagtattctccgacttttgccgaacattaatttc |
44320962 |
T |
|
| Q |
248 |
tgtcaaggaaccttgttggtcaccattggtggggtttcctttcctctcccaagcatgttttcacaatgtgttttacttgatcatgttggtaggattcagc |
347 |
Q |
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| T |
44320963 |
tgtcaaggaaccttgttggtcaccattagtggggtttcctttcctctcccaagcatgttttcacaatgtgttttacttgatcatgttggtaggattcagc |
44321062 |
T |
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| Q |
348 |
taaaaacgaaattctaaatcaaattacaatattttgatgtaatgaatgtgatgtgaggattctgctaattctttgtgacgata-nnnnnnngcaaccatg |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
44321063 |
taaaaacgaaattctaaatcaaattacaatattttgatgtaatgaatgtgatgtgacgattctgctaattctttgtgacgatattttttttgcaaccatg |
44321162 |
T |
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| Q |
447 |
ttccttctcttctaatgtttaattggaactctttctaggagatacatgaggttaaattgaagcactcttcttgttagtgannnnnnncaattttgctaat |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
44321163 |
ttccttctcttctaatgtttaattggaactctttctaggagatacatgaggttaaattgaagtactcttcttgttagtgatttttttcaattttgctaat |
44321262 |
T |
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| Q |
547 |
gtgttacttatcttttgttgtctctgct |
574 |
Q |
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| T |
44321263 |
gtgttacttatcttttgttgtctctgct |
44321290 |
T |
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