View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10357_low_4 (Length: 376)
Name: NF10357_low_4
Description: NF10357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10357_low_4 |
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| [»] scaffold0465 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 28520022 - 28520112
Alignment:
| Q |
19 |
caatcacaatcatctcctccccaaatgctacgtcacacggactccgtaaccacctcaagctttgattctcgaatggccaaaaaatccaccc |
109 |
Q |
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| T |
28520022 |
caatcacaatcatctcctccccaaatgctacgacacacggactctgtaaccacctcaagctttgattcttgaatggccaaaaactccaccc |
28520112 |
T |
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Target: scaffold0465 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0465
Description:
Target: scaffold0465; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 6900 - 6953
Alignment:
| Q |
148 |
ggtgattctggaaccaaggatccggactcctccaaaatcaaatgcaaacccgaa |
201 |
Q |
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| T |
6900 |
ggtgattccagaaccaaggatccggactcctccaaaatcaaatacaatcccgaa |
6953 |
T |
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