View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10357_low_5 (Length: 344)

Name: NF10357_low_5
Description: NF10357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10357_low_5
NF10357_low_5
[»] chr8 (2 HSPs)
chr8 (21-80)||(15050046-15050105)
chr8 (205-261)||(15049865-15049921)
[»] chr3 (1 HSPs)
chr3 (214-261)||(1653874-1653921)
[»] chr1 (2 HSPs)
chr1 (207-254)||(26841807-26841854)
chr1 (21-77)||(15496013-15496069)
[»] scaffold0092 (1 HSPs)
scaffold0092 (21-77)||(23310-23366)
[»] chr6 (1 HSPs)
chr6 (36-75)||(30845559-30845598)
[»] chr5 (1 HSPs)
chr5 (36-75)||(26331071-26331110)
[»] chr4 (1 HSPs)
chr4 (21-75)||(12469363-12469417)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 15050105 - 15050046
Alignment:
Q  21 aagacctagtaccagcaccaccattgaaaccaccacgaagcaccagaaaccaacatagcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15050105 aagacctagtaccagcaccaccattgaaaccaccacgaagcaccacaaaccaacatagcc 15050046  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 15049921 - 15049865
Alignment:
Q  205 tatggccgactagtgaaccattaaccaccacccccataacgacctctcaccggcgca 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15049921 tatggccgactagtgaaccattaaccaccacccccataacgacctctcaccgacgca 15049865  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 1653874 - 1653921
Alignment:
Q  214 ctagtgaaccattaaccaccacccccataacgacctctcaccggcgca 261  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  1653874 ctagtgaaccattaacgaccacccccataacgacctctcactggcgca 1653921  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 26841854 - 26841807
Alignment:
Q  207 tggccgactagtgaaccattaaccaccacccccataacgacctctcac 254  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  26841854 tggccggctagtgaaccattaaccaccaccctcataacgacctctcac 26841807  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 15496013 - 15496069
Alignment:
Q  21 aagacctagtaccagcaccaccattgaaaccaccacgaagcaccagaaaccaacata 77  Q
    |||||| |||| ||||||||||||  ||||||||||||| ||||| || ||||||||    
T  15496013 aagaccaagtatcagcaccaccatgaaaaccaccacgaaacaccacaatccaacata 15496069  T

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Target: scaffold0092 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 23310 - 23366
Alignment:
Q  21 aagacctagtaccagcaccaccattgaaaccaccacgaagcaccagaaaccaacata 77  Q
    ||||||||||| |||||||||||| ||||||||||| |||||||| |||| ||||||    
T  23310 aagacctagtatcagcaccaccatggaaaccaccacaaagcaccacaaacgaacata 23366  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 30845559 - 30845598
Alignment:
Q  36 caccaccattgaaaccaccacgaagcaccagaaaccaaca 75  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  30845559 caccaccatggaaaccaccacgaagcaccataaaccaaca 30845598  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 26331110 - 26331071
Alignment:
Q  36 caccaccattgaaaccaccacgaagcaccagaaaccaaca 75  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  26331110 caccaccatagaaaccaccacgaagcaccacaaaccaaca 26331071  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 12469417 - 12469363
Alignment:
Q  21 aagacctagtaccagcaccaccattgaaaccaccacgaagcaccagaaaccaaca 75  Q
    ||||||||||| |||||||||||| | |||||||| |||| |||| |||||||||    
T  12469417 aagacctagtatcagcaccaccatggtaaccaccatgaaggaccacaaaccaaca 12469363  T

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