View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10358_high_1 (Length: 472)
Name: NF10358_high_1
Description: NF10358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10358_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 180 - 441
Target Start/End: Original strand, 28756796 - 28757057
Alignment:
| Q |
180 |
agttgtctcacagtatagtctctacaaacatcaataaagagaagatctaattaacattttacaaataatggatcatttcatcacagttaggaatcaataa |
279 |
Q |
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| T |
28756796 |
agttgtctaacagtatagtctctacaaacatcaataaagagaagatctaattaacattttacaattaatggatcatttcatcacagttaggaatcaataa |
28756895 |
T |
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| Q |
280 |
tccatgaggcatcaaaagtcaccaattgattaaaattgcagaatacgtgcgccaggatgaaccttcagttacaaatccctatcagcctgcaaagttccac |
379 |
Q |
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| T |
28756896 |
tccatgaggcaccaaaagtcaccaactgattaaaattgcagaatacgtgcgccaggatgaaccttcagttacaaatccctatcagcctgcaaagttccac |
28756995 |
T |
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| Q |
380 |
caacatatgcttgtgaacaatcataactagtttcactacagctttagcctttaatgtggtcc |
441 |
Q |
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| T |
28756996 |
caacatatgcttgtgaacaatcataactagtttcactacagctttagcctttaatgtggtcc |
28757057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 28756511 - 28756550
Alignment:
| Q |
20 |
acatcatcaacataatatcagtatgagaaatgatatttgt |
59 |
Q |
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| T |
28756511 |
acatcatcaacataatatcactatgagaaatgatatttgt |
28756550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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