View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10358_high_3 (Length: 340)
Name: NF10358_high_3
Description: NF10358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10358_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 41555523 - 41555853
Alignment:
| Q |
1 |
gtacactctgtttatatttacatcaatactctcatcacttcctaatcctctacgtgattgcaatcgcttcctaattacatcaatattcaatatatatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41555523 |
gtacactctgtttatatttacatcaatactctcatcacttcctaatcctctacgtgattgcaatcgcttcctaattacatcaatattcaatatatatcaa |
41555622 |
T |
|
| Q |
101 |
ttccactcaagaactcatcaaagatacattcatggcttcagctactacaatttcatcatcagaaccaacaaaggttcatacatcaaatatttcaagcatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41555623 |
ttccactcaagaactcatcaaagatacatccatggcttcagctactacaatttcatcatcagaaccaacaaaggttcatacatcaaatatttcaagcatc |
41555722 |
T |
|
| Q |
201 |
aaagcctttgcggaatcaaatggaacctctctcattccttccaattaccactccctcacagaacatggtgatattattgatgttgcagatgagattgcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41555723 |
aaagcctttgcggaatcaaatggaacctctctcattccttccaattaccactccctcacagaacatggtgatattattgatgttgcagatgagattgcag |
41555822 |
T |
|
| Q |
301 |
cttccatcccaatcattgatttctctctgct |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41555823 |
cttccatcccaatcattgatttctctctgct |
41555853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 328
Target Start/End: Original strand, 41560408 - 41560502
Alignment:
| Q |
234 |
attccttccaattaccactccctcacagaacatggtgatattattgatgttgcagatgagattgcagcttccatcccaatcattgatttctctct |
328 |
Q |
| |
|
|||||||| | ||||||||||||| |||||| || ||||||| |||||||| |||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
41560408 |
attccttcaagttaccactccctcgcagaacctgatgatattgttgatgttacagaggagcttgcagcttccatcccagtcattgatttctctct |
41560502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 41560313 - 41560404
Alignment:
| Q |
118 |
tcaaagatacattcatggcttcagctactacaatttcatcatcagaaccaacaaaggttcatacatcaaatatttcaagcatcaaagccttt |
209 |
Q |
| |
|
||||| |||||| ||||||||||||| || ||||||||||||||||| ||||| ||| || |||||||||||||||| |||||||||||| |
|
|
| T |
41560313 |
tcaaatatacatccatggcttcagctcctttcatttcatcatcagaacctacaaaagttgatgcatcaaatatttcaagtatcaaagccttt |
41560404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University