View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10358_high_5 (Length: 327)
Name: NF10358_high_5
Description: NF10358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10358_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 39299513 - 39299363
Alignment:
| Q |
12 |
agagagcaagagagaaattagaagaaacaaggggaagaaaagttggtggtgaaaatgaaggtgtaatcttgggaaagagtgtagctgagcaaagaggaag |
111 |
Q |
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| T |
39299513 |
agagagcaagagagaaattagaagaaacaaggggaagaaaagttggtggtgaaaatgaaggtgtaatcttgggaaagagtgttgctgagcaaagaggaag |
39299414 |
T |
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| Q |
112 |
agcgggtgctggaaatgaaggtgcaatgttgggaaaaaatggtgctgaaca |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
39299413 |
agcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgctgctgaaca |
39299363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 193 - 327
Target Start/End: Complemental strand, 39299332 - 39299198
Alignment:
| Q |
193 |
aatgtctttggaagagatagggaagtatagaaaccaagcacaacaaaatgaaatggacgcaatctcagcagcacaagagaggtatgaaaaagcaaagcaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299332 |
aatgtctttggaagagatagggaagtatagaaaccaagcacaacaaaatgaaatggacgcaatctcagcagcacaagagaggtatgaaaaagcaaagcaa |
39299233 |
T |
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| Q |
293 |
gcaacaaacgaaacactaaacaacacagcacaaac |
327 |
Q |
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| T |
39299232 |
gcaacaaacgaaacactaaacaacacagcacaaac |
39299198 |
T |
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