View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10358_high_6 (Length: 312)

Name: NF10358_high_6
Description: NF10358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10358_high_6
NF10358_high_6
[»] chr7 (1 HSPs)
chr7 (30-312)||(48167490-48167772)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 48167772 - 48167490
Alignment:
Q  30 aacttggcattactcatgtactctggatccatgtaacctatagttcctctaacatcagtaaaaaccttgctctcttccatgcccatcatccttgacaatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48167772 aacttggcattactcatgtactctggatccatgtaacctatagttcctctaacatcagtaaaaaccttgctctcttccatgcccatcatccttgacaatc 48167673  T
Q  130 caaaatccgacagtttggcttcatatttctcagtcaaaagaatgtttgtaagctaaacaataaaatcaatacaaggcattaagaaaacattttctaatca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48167672 caaaatccgacagtttggcttcatatttctcagtcaaaagaatgtttgtaagctaaacaataaaatcaatacaaggcattaagaaaacattttctaatca 48167573  T
Q  230 ttcccaattaagtgcagaatccattccagattaacttcatcacacttaccttgatatctctatggacaacacaaccctctata 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48167572 ttcccaattaagtgcagaatccattccagattaacttcatcacacttaccttgatatctctatggacaacacaaccctctata 48167490  T

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