View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10359_high_3 (Length: 569)
Name: NF10359_high_3
Description: NF10359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10359_high_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 116 - 569
Target Start/End: Original strand, 36292038 - 36292491
Alignment:
| Q |
116 |
atacagtcagtcttcttgatctctcatnnnnnnntagtgcattatctaaaatgctcttcgtagaaacttgttttatgaaaacaaaagaatcaaaagtagt |
215 |
Q |
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| T |
36292038 |
atacaatcaatcttcttgatctctcataaaaaaatagtgcattatctaaaatgctcttcgtagaaacttgttttatgaaaacaaaagaatcaaaagtagt |
36292137 |
T |
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| Q |
216 |
ttatatttgcatatacttaaaacaaaaaatatgagattttttgttgttcttatatacaagaataattttgttgtttttcattgtgaagttaatagggaac |
315 |
Q |
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| T |
36292138 |
ttatatttgcatatacttaaaacaaaaaatatgagattttttgttgttcttatatacaagaataattttgttgtttttcattgtgaagttaatagggaac |
36292237 |
T |
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| Q |
316 |
acaccattggtatatcttaacaacataacagaagggtgtgtagctcgtattgctgctaagctagaatacttgcaatcctgctgcagtgtcaaagataggc |
415 |
Q |
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| T |
36292238 |
acaccattggtatatcttaacaacattacagaagggtgtgtagctcgtattgctgctaagctagaatacttgcaatcctgctgcagtgtcaaagataggc |
36292337 |
T |
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| Q |
416 |
atggaattctattatttcacaaactaaaactgttttgaaattgttaagttttaagattcttaataagaaattaagaatttgtattgataatcttgttttt |
515 |
Q |
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| T |
36292338 |
atggaattctattatttcacaaactaaaactgttttgaaattgttaagttttaagattcttaataagaaattaagaatttgtattgataatcttgttttt |
36292437 |
T |
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| Q |
516 |
ctcactcaggatagcattgagcatgattgaagatgccgaaaataaaggcttcat |
569 |
Q |
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| T |
36292438 |
cgcactcaggatagcattgagcatgattgaagatgccgaaaataaaggcttcat |
36292491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 276 - 569
Target Start/End: Original strand, 36280725 - 36281019
Alignment:
| Q |
276 |
aataattttgttgtttttcattgtgaagttaatagggaacacaccattggtatatcttaacaacataacagaagggtgtgtagctcgtattgctgctaag |
375 |
Q |
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| T |
36280725 |
aataattttgttgtttttcattgtgaagttaatagggaacacaccattggtatatctaaacaacataacagaaggatgtgtagctcgtattgctgctaag |
36280824 |
T |
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| Q |
376 |
ctagaatacttgcaatcctgctgcagtgtcaaagataggcatg-gaattctattatttcacaaactaaaactgttttgaaattgttaagttttaagattc |
474 |
Q |
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| T |
36280825 |
ctagaatacttgcaatcctgctgtagtgttaaagataggtatgtaaatggaataatttcacaaacttgaactgttttaatattgttaggttttaagattc |
36280924 |
T |
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| Q |
475 |
ttaataagaaattaagaatttgtattgataatcttgtttttctcactcaggatagcattgagcatgattgaagatgccgaaaataaaggcttcat |
569 |
Q |
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| T |
36280925 |
ttagtaagaaattaagaatttgtaatgataatattgtttttctcacttaggatatcgttgagcatgattgaagatgctgagagtaaaggcctcat |
36281019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 276 - 563
Target Start/End: Original strand, 36286227 - 36286515
Alignment:
| Q |
276 |
aataattttgttgttt--ttcattgtgaagttaatagggaacacaccattggtatatcttaacaacataacagaagggtgtgtagctcgtattgctgcta |
373 |
Q |
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| T |
36286227 |
aataattttgttgtttggttgattgtgaagttaatagggaacacaccattggtatatctaaacaacattacagaagggtgtgtagctcgtattgctgcta |
36286326 |
T |
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| Q |
374 |
agctagaatacttgcaatcctgctgcagtgtcaaagataggcatggaattcta------ttatttcacaaactaaaactgttttgaaattgttaagtttt |
467 |
Q |
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| T |
36286327 |
agctagagtacttgcaatcttgctgcagtgtcaaagataggcatggaattcgaattcgtctatttcacaaactagagctgtatttaaattgtaaggtttt |
36286426 |
T |
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| Q |
468 |
aagattcttaataagaaattaagaatttgtattgataatcttgtttttctcactcaggatagcattgagcatgattgaagatgccgaaaataaagg |
563 |
Q |
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| T |
36286427 |
aagactttt-------aattaagaatttgtagtgataatcttttttttctcacgcaggatagcattgagcatgattgaagatgctgagaataaagg |
36286515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43075178 - 43075244
Alignment:
| Q |
1 |
agcagagaggtacagaagagaatgaaagtgaaaatggtgtgaaagggaagaaggaatggaccactga |
67 |
Q |
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| T |
43075178 |
agcagagaggtacagaagagaatgaaagtgaaaatggtgtgaaagggaagaaggaatggaccactga |
43075244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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