View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10359_high_8 (Length: 326)
Name: NF10359_high_8
Description: NF10359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10359_high_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 51112971 - 51112655
Alignment:
| Q |
10 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112971 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
51112872 |
T |
|
| Q |
110 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112871 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
51112772 |
T |
|
| Q |
210 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgaaaagaccaaacattatgctgctgacgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51112771 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgagaagaccaaacattatgctgctgacgaa |
51112672 |
T |
|
| Q |
310 |
agctatgcagatgatga |
326 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
51112671 |
agctatgcagatgatga |
51112655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University