View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1035_low_1 (Length: 604)
Name: NF1035_low_1
Description: NF1035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1035_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 98 - 335
Target Start/End: Complemental strand, 9348710 - 9348473
Alignment:
| Q |
98 |
ccctttgtatcacctactccaagaaagtcaaaaaatggcatcttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcttgtttg |
197 |
Q |
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| T |
9348710 |
ccctatgtatcacctactccaagaaagtcaaaaaatggcatcttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcctgtttg |
9348611 |
T |
|
| Q |
198 |
ttgcaactggctcagatgctgaatcttctgagtttgaatctgaatgattggattggtccacaatataaactaaaacatgagagaaaataacaaatttttc |
297 |
Q |
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| T |
9348610 |
ttgcagctggctcagatgctgaatcttctgagtttgaatctgaatgattggattggtccgcaatataaactaaaacatgagagaaaataacaaatttttc |
9348511 |
T |
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| Q |
298 |
aagcaatttaaaggattaaatgaaaattattgttaaat |
335 |
Q |
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| T |
9348510 |
aagcaatttaaaggattaaatgaaaattattgttaaat |
9348473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 272 - 595
Target Start/End: Complemental strand, 9356608 - 9356280
Alignment:
| Q |
272 |
acatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaatgaggttaatgcaacttcaatcgaagttgcaaagaca |
371 |
Q |
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| T |
9356608 |
acatgagagaagattgcaaaattttcaagcaatttaaaggtttaaatgagaatcgttgttaaatgaggccgatgcagcttcaatcgaagttgtaaagaaa |
9356509 |
T |
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| Q |
372 |
tgaaaaaatca-----gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacctatt |
466 |
Q |
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| T |
9356508 |
taaaaaaaaaaaatttgatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacccatt |
9356409 |
T |
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| Q |
467 |
tgtgaactagctaaaggcctagtgagattgagattgaattcatcaatgggacttgttatggcaaattttgctggtatttcatatgttagcttttcctttc |
566 |
Q |
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| T |
9356408 |
tgagaactaggtaaaggcctagtgaggttgagattggattcatcaatgggacttgtgatggcaaattttgctgggatttcatatgttagcttttcctttc |
9356309 |
T |
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| Q |
567 |
ttgcaatagatgatagtagttccctttgc |
595 |
Q |
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| T |
9356308 |
ttgcaatagatgataggagttccctttgc |
9356280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 383 - 595
Target Start/End: Complemental strand, 9348467 - 9348255
Alignment:
| Q |
383 |
gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacctatttgtgaactagctaaag |
482 |
Q |
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|||||| |||||||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||| ||||| |
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| T |
9348467 |
gatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacccatttgagaactaggtaaag |
9348368 |
T |
|
| Q |
483 |
gcctagtgagattgagattgaattcatcaatgggacttgttatggcaaattttgctggtatttcatatgttagcttttcctttcttgcaatagatgatag |
582 |
Q |
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| T |
9348367 |
gcctagtgaggttgagattggattcatcaatgggacttgtgatggcaaattttgctgggatttcatatgttagcttttcctttcttgcaatagatgatag |
9348268 |
T |
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| Q |
583 |
tagttccctttgc |
595 |
Q |
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| T |
9348267 |
gagttccctttgc |
9348255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 9361689 - 9361533
Alignment:
| Q |
103 |
tgtatcacctactccaagaaagtcaaaaaatggcatcttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcttgtttgttgca |
202 |
Q |
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|||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
9361689 |
tgtatcacctactccaagaaagtcaataaatgacaccttaatcttatctctaacattttcactttcccccaaaattgatccattgttcatgtttgttgca |
9361590 |
T |
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| Q |
203 |
actggctcagatgctgaatcttctgagtttgaatctgaatgattggattggtccaca |
259 |
Q |
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| T |
9361589 |
actgactcagatactgaaacttctgagtttgaatatgaatgattggattggtccaca |
9361533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 9356962 - 9356796
Alignment:
| Q |
98 |
ccctttgtatcacctactccaagaaagtcaaaaaatggcatcttaatcttatctcccacattttcactgtcccccaaaattaatcc---attgttcttgt |
194 |
Q |
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| T |
9356962 |
ccctatgtatcacttatttcaagaaagtcaaaaaatggcatcttaatcttatctcccacattttcactatcccctaaaattgatccattattgttcatgt |
9356863 |
T |
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| Q |
195 |
ttgttgcaactggctcagatgctgaatcttctgagtttgaatctgaatgattggattggtccacaat |
261 |
Q |
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| T |
9356862 |
ttgttgcagcagactcagatgttgaaccttctgagtttgaatctgaaatattggattggtccgcaat |
9356796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 598
Target Start/End: Complemental strand, 9360890 - 9360825
Alignment:
| Q |
533 |
tttgctggtatttcatatgttagcttttcctttcttgcaatagatgatagtagttccctttgcttc |
598 |
Q |
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| T |
9360890 |
tttgctgggatttgaaatgttagctttctctttcttgaaatagatgataatagttccctttgcttc |
9360825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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