View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1035_low_2 (Length: 441)
Name: NF1035_low_2
Description: NF1035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1035_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 31524196 - 31523877
Alignment:
| Q |
16 |
ataaattataatgtattcacaatgcagggagcaagacctttcaaatcattccttatcataaagttgccatatgacaagcatgcttctttgccaaatatat |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524196 |
ataaattataatgtattcacaatgcagggggcaagacctttcaaatcattccttatcataaagttgccatatgacaagcatgcttctttgccaaatatat |
31524097 |
T |
|
| Q |
116 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524096 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
31523997 |
T |
|
| Q |
216 |
aaacatagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcact |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31523996 |
aaacgtagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcact |
31523897 |
T |
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| Q |
316 |
tagtgtaaggtgcagttcag |
335 |
Q |
| |
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|||||||||||||||||||| |
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| T |
31523896 |
tagtgtaaggtgcagttcag |
31523877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 49194154 - 49193831
Alignment:
| Q |
16 |
ataaattataatgtattcacaatgcagggagcaagacctttcaaatcattccttatcataaagttgccatatgacaagcatgcttctttgccaaatatat |
115 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49194154 |
ataaattataatgtattcacaatgcagggggcaagacctttcaaatcattccttatcataaagttgccatatggcaagcatgcttctttgccaaatatat |
49194055 |
T |
|
| Q |
116 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49194054 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
49193955 |
T |
|
| Q |
216 |
aaacatagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcact |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
49193954 |
aaacgtagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcact |
49193855 |
T |
|
| Q |
316 |
tagtgtaaggtgcagttcagttat |
339 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
49193854 |
tagtgtaaggtgcagttcagttat |
49193831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 33367304 - 33367627
Alignment:
| Q |
16 |
ataaattataatgtattcacaatgcagggagcaagacctttcaaatcattccttatcataaagttgccatatgacaagcatgcttctttgccaaatatat |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33367304 |
ataaattataatgtattcacaatacagggggcaagacctttcaaatcattccttatcataaagttgccatatggcaagcatgcttctttgccaaatatat |
33367403 |
T |
|
| Q |
116 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33367404 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacattagtgcatgtcaggttcatttatcctacaa |
33367503 |
T |
|
| Q |
216 |
aaacatagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcact |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
33367504 |
aaacatagaaggttcatttatttaatggtgggaagtatattatataatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcact |
33367603 |
T |
|
| Q |
316 |
tagtgtaaggtgcagttcagttat |
339 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
33367604 |
tagtgtaaggtgcagttcagttat |
33367627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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