View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1035_low_3 (Length: 428)
Name: NF1035_low_3
Description: NF1035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1035_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 8447427 - 8447033
Alignment:
| Q |
11 |
cacagaaaacctgatttcctcaaaatccatgtaataataataat---------tcatacacttcacttcttctaccttgttgttatgttagtcatcatca |
101 |
Q |
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| T |
8447427 |
cacagaaaacctgatttcctcaaaatccatgtaataataataataataataattcatacacttcacttcttctaccttgttgtta-----gtcatcatca |
8447333 |
T |
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| Q |
102 |
taattttc-acattgcttgtttaattttcagccatttggtcaagtacctgcatatcaagatcacgacatttctctcttcggtaagtaattcattcattaa |
200 |
Q |
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| T |
8447332 |
taatttttgacattgcttgtttaattttcagccatttggtcaagtacctgcatatcaagatcacgacatttctctcttcggtaagtaattcattaattaa |
8447233 |
T |
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| Q |
201 |
tt-aatcagttgcttcttacttaattaataatcaattagtattttcaattttaattgtataacatcagagtcaagagctatatgtcggtacgtatgtgag |
299 |
Q |
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| T |
8447232 |
tttaatcagttgcttcttacttaattaataatcaattagtattttcaatttaaattgtataacatcagagtcaagagcgatatgtcggtacgtatgcgag |
8447133 |
T |
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| Q |
300 |
aaaaatagagagaaagggaacaaacaactgtatgatacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaaggacaaagcttcaatc |
399 |
Q |
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| T |
8447132 |
aaaaatatagagaaagggaacaaacaactgtatggtacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaaggacaaagcttcaatc |
8447033 |
T |
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