View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1035_low_6 (Length: 309)
Name: NF1035_low_6
Description: NF1035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1035_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 53 - 299
Target Start/End: Original strand, 1557800 - 1558049
Alignment:
| Q |
53 |
agctttaatgtttgcacatgacatttaacatttcttttgctttcagttgttactaaaatagtttgaataact----tcacatctttttcagatgagaagt |
148 |
Q |
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| T |
1557800 |
agctttaatgtttgcacatgacatttaacatttcttttgctttcagttgttactaaaatagtttgaataactaacttcacatctttttcagatgagaagt |
1557899 |
T |
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| Q |
149 |
attgcaggtaagtaagatgtctcactgtgctagaagaaatacattcaactgtttatgaattaggtacatagacaataatgtgattgataatattgggtgt |
248 |
Q |
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| T |
1557900 |
attgcaggtaagtaagatgtctcactgtgctagaagaaatacattcaactgtttatgt-ttaggtacatagacaataatgtgattgataatattgggtgt |
1557998 |
T |
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| Q |
249 |
gtgttcttgagttaaataaacaataatgtgattgataatactgagtctgtg |
299 |
Q |
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| T |
1557999 |
gtgttcttgagttaaataaacaataatgtgattgataatactgagtgtgtg |
1558049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 1558018 - 1558055
Alignment:
| Q |
220 |
acaataatgtgattgataatattgggtgtgtgttcttg |
257 |
Q |
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| T |
1558018 |
acaataatgtgattgataatactgagtgtgtgttcttg |
1558055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 23891279 - 23891377
Alignment:
| Q |
139 |
gatgagaagtattgcaggtaagtaagatgtctcactgtgctagaagaaatacattcaactgtttatgaattaggtacatagacaataatgtgattgata |
237 |
Q |
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| T |
23891279 |
gatgagaagtattgtaggtaagtaatatgtctcactgttctaaaagaaatacattcaactattaatgaattagttagataaataataatgtgattgata |
23891377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 52936232 - 52936357
Alignment:
| Q |
58 |
taatgtttgcacatgacatttaacatttcttttgctttcagttgttactaaaatagtttgaataacttcacatctttttcagatgagaagtattgcaggt |
157 |
Q |
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| T |
52936232 |
taatgttttcatatgacattgaacatttattttgctttcaactgttactaaaatagtcaggataatttgacatgtttttcagatgaaaagtattgtaggc |
52936331 |
T |
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| Q |
158 |
aagtaagatgtctcactgtgctagaa |
183 |
Q |
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| T |
52936332 |
aagtaagaagtctcaccgtgctagaa |
52936357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 52943867 - 52943992
Alignment:
| Q |
58 |
taatgtttgcacatgacatttaacatttcttttgctttcagttgttactaaaatagtttgaataacttcacatctttttcagatgagaagtattgcaggt |
157 |
Q |
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| T |
52943867 |
taatgttttcatatgacattgaacatttattttgctttcaactgttactaaaatagtcaggataatttgacatgtttttcagatgaaaagtattgtaggc |
52943966 |
T |
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| Q |
158 |
aagtaagatgtctcactgtgctagaa |
183 |
Q |
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| T |
52943967 |
aagtaagaagtctcaccgtgctagaa |
52943992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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