View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1035_low_7 (Length: 299)
Name: NF1035_low_7
Description: NF1035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1035_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 31132466 - 31132175
Alignment:
| Q |
1 |
agcttgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaa |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31132466 |
agcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaactcagcccaa |
31132367 |
T |
|
| Q |
101 |
tcggatccccatattttctcagaccttcccatagcatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaacatcatcgt |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31132366 |
tcggatccccatattttctcagaccttcccataacatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaacatcatcgt |
31132267 |
T |
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| Q |
201 |
aggctgcttccttagcatccactggaactggagggtacaatctcatactctcgcataacgatgcatgagtgtaaaccatatccttcatctca |
292 |
Q |
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|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
31132266 |
aggctgcttccttagcatccactgaaactggagggtccattctcatactctcgcataacgatgcatgagtgtaaaccatattcttcacctca |
31132175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 31078440 - 31078149
Alignment:
| Q |
1 |
agcttgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaa |
100 |
Q |
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|||||||||||||| |||| |||||||||||||||||| ||| ||||| || ||||| ||| || |||||||||||||||| |||||||||||||||||| |
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| T |
31078440 |
agcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaa |
31078341 |
T |
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| Q |
101 |
tcggatccccatattttctcagaccttcccatagcatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaacatcatcgt |
200 |
Q |
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|| ||||||||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||| || |||||||||||||||||||||| || |
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| T |
31078340 |
tcaagtccccatattttctccgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaacatcattgt |
31078241 |
T |
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| Q |
201 |
aggctgcttccttagcatccactggaactggagggtacaatctcatactctcgcataacgatgcatgagtgtaaaccatatccttcatctca |
292 |
Q |
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| |||||||| |||| |||||||||||||||||| || | ||||||||||||||||||||| |||||||| |||||||||||||||| |||| |
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| T |
31078240 |
acgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctca |
31078149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 31127754 - 31127467
Alignment:
| Q |
5 |
tgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaatcgg |
104 |
Q |
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|||||||||| |||| |||||||||||||||||| ||||||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||||| |
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| T |
31127754 |
tgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgg |
31127655 |
T |
|
| Q |
105 |
atccccatattttctcagaccttcccatagcatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaacatcatcgtaggc |
204 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||| | || ||||||||||||||||||| |||||||| |||||||| || || | || |
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| T |
31127654 |
gtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcacaagc |
31127555 |
T |
|
| Q |
205 |
tgcttccttagcatccactggaactggagggtacaatctcatactctcgcataacgatgcatgagtgtaaaccatatccttcatctca |
292 |
Q |
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||||||||| ||||||| ||||| ||||| |||| |||||||||||| ||||| | ||||||||||||||||||||||||| |||| |
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| T |
31127554 |
cgcttccttaccatccacgggaaccggaggatacagtctcatactctcacataaagccgcatgagtgtaaaccatatccttcacctca |
31127467 |
T |
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