View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10360_high_10 (Length: 309)
Name: NF10360_high_10
Description: NF10360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10360_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 2686292 - 2686014
Alignment:
| Q |
1 |
gtatcgtagtagatatagtatctacaccaaggtaatatatgtttttgaggatgatcaagtgctgctaaaagatttaagtgattcggcattgattctttac |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2686292 |
gtatcgtggtagatatagtatctacaccaaggtaatatatgtttttgaggatgatcaagtgctgctaaaagatttaagtgattcggcattgattctttac |
2686193 |
T |
|
| Q |
101 |
aattccaaaaatggtactcataagtcttttaattttatagacattccagaagtctgcattgagagtttaatatggccttgttcttaatgtcatgtcactt |
200 |
Q |
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| T |
2686192 |
aattccaaaaatggtactcataagtctattaattttatagacattccagaagtctgcattgagagtttaatatggccttgttcttaatgttatgtcactt |
2686093 |
T |
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| Q |
201 |
gagcatgagattcaactgatacatctttcaggaaaaaactgatacacatatattagtttctgtttatgttatttattta |
279 |
Q |
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| T |
2686092 |
gagcatgagattcaactgatacatctttcaggaaaaaactgatacacatatattagtttctgtttatgttatttattta |
2686014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 2678282 - 2678182
Alignment:
| Q |
89 |
ttgattctttacaattccaaaaatggtactcataagtcttttaattttatagacattccagaagtctgcattgagagtttaatatggccttgttcttaat |
188 |
Q |
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| T |
2678282 |
ttgattctctacaattataaaaatggtactcttaagtctacaaatcttaaaaacaatccagaagtctgtattgagagtttaatatggccttgttcttaat |
2678183 |
T |
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| Q |
189 |
g |
189 |
Q |
| |
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| |
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|
| T |
2678182 |
g |
2678182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 2678141 - 2678043
Alignment:
| Q |
179 |
tgttcttaatgtcatgtcacttgagcatgagattcaactgatacat-ctttcaggaaaaaactgatacacatatattagtttctgtttatgttatttatt |
277 |
Q |
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|||||||||| | ||||||||||||| ||||||||||||||||||| |||||| || ||||||||| || |||||||||| | ||||||||||||||| |
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| T |
2678141 |
tgttcttaattttatgtcacttgagcgtgagattcaactgatacatcctttca-gattaaactgataaacttatattagtt--tttttatgttatttatt |
2678045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 989621 - 989665
Alignment:
| Q |
146 |
ccagaagtctgcattgagagtttaatatggccttgttcttaatgt |
190 |
Q |
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| T |
989621 |
ccagaagtctgcattgagagtttaatatcaccttgtttttaatgt |
989665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 4157898 - 4157859
Alignment:
| Q |
27 |
ccaaggtaatatatgtttttgaggatgatcaagtgctgct |
66 |
Q |
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|||||| |||||||||||||||||||||||||||| |||| |
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| T |
4157898 |
ccaaggcaatatatgtttttgaggatgatcaagtgttgct |
4157859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 2678353 - 2678325
Alignment:
| Q |
27 |
ccaaggtaatatatgtttttgaggatgat |
55 |
Q |
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| T |
2678353 |
ccaaggtaatatatgtttttgaggatgat |
2678325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 4142081 - 4142049
Alignment:
| Q |
34 |
aatatatgtttttgaggatgatcaagtgctgct |
66 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
4142081 |
aatatatgtttttgaggatgatcaagtgttgct |
4142049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 36577622 - 36577666
Alignment:
| Q |
146 |
ccagaagtctgcattgagagtttaatatggccttgttcttaatgt |
190 |
Q |
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|||||||| ||||||||||||||||||| ||||| ||||||||| |
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| T |
36577622 |
ccagaagtatgcattgagagtttaatatcaccttggtcttaatgt |
36577666 |
T |
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