View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10360_high_2 (Length: 552)

Name: NF10360_high_2
Description: NF10360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10360_high_2
NF10360_high_2
[»] chr6 (7 HSPs)
chr6 (145-207)||(24950150-24950212)
chr6 (169-226)||(17369690-17369747)
chr6 (145-226)||(20770652-20770733)
chr6 (325-416)||(24949986-24950077)
chr6 (169-213)||(6921350-6921394)
chr6 (169-213)||(6947880-6947924)
chr6 (145-209)||(14749399-14749463)
[»] chr7 (28 HSPs)
chr7 (145-226)||(660834-660915)
chr7 (145-215)||(29454101-29454171)
chr7 (150-226)||(24385208-24385284)
chr7 (148-226)||(14076683-14076761)
chr7 (148-226)||(14386711-14386789)
chr7 (145-223)||(19344565-19344643)
chr7 (145-226)||(29430988-29431069)
chr7 (152-226)||(19357919-19357993)
chr7 (145-215)||(29921991-29922061)
chr7 (169-226)||(6864794-6864851)
chr7 (128-225)||(29859439-29859536)
chr7 (149-226)||(29874517-29874594)
chr7 (169-232)||(18514768-18514831)
chr7 (149-212)||(19604464-19604527)
chr7 (175-226)||(20058044-20058095)
chr7 (149-204)||(20414888-20414943)
chr7 (145-212)||(29106816-29106883)
chr7 (167-213)||(15571895-15571941)
chr7 (145-211)||(19722020-19722086)
chr7 (145-215)||(21210479-21210549)
chr7 (145-211)||(22028630-22028696)
chr7 (160-226)||(29881273-29881339)
chr7 (145-211)||(29899376-29899442)
chr7 (179-224)||(24002235-24002280)
chr7 (179-224)||(24010419-24010464)
chr7 (29-98)||(24385090-24385159)
chr7 (145-210)||(24391416-24391481)
chr7 (149-226)||(29867242-29867319)
[»] chr4 (8 HSPs)
chr4 (145-222)||(53774842-53774919)
chr4 (149-215)||(3565750-3565816)
chr4 (145-215)||(837778-837848)
chr4 (169-215)||(3557752-3557798)
chr4 (169-215)||(3560956-3561002)
chr4 (145-226)||(11970969-11971050)
chr4 (145-208)||(35767020-35767083)
chr4 (149-225)||(53790559-53790635)
[»] chr2 (6 HSPs)
chr2 (145-224)||(18908798-18908877)
chr2 (145-224)||(18913546-18913625)
chr2 (145-224)||(18920754-18920833)
chr2 (146-226)||(14514903-14514983)
chr2 (145-214)||(25377076-25377145)
chr2 (145-195)||(10205462-10205512)
[»] chr3 (3 HSPs)
chr3 (149-225)||(3625740-3625816)
chr3 (145-217)||(25901275-25901347)
chr3 (145-217)||(25915293-25915365)
[»] chr1 (6 HSPs)
chr1 (146-212)||(4014966-4015032)
chr1 (145-213)||(4570929-4570997)
chr1 (149-215)||(39379059-39379125)
chr1 (145-226)||(4366482-4366563)
chr1 (145-212)||(21855384-21855451)
chr1 (145-223)||(10218987-10219065)
[»] chr5 (3 HSPs)
chr5 (145-226)||(28763892-28763973)
chr5 (145-212)||(24330900-24330967)
chr5 (132-211)||(29597554-29597633)
[»] chr8 (1 HSPs)
chr8 (175-225)||(27618523-27618573)
[»] scaffold0354 (1 HSPs)
scaffold0354 (169-225)||(7489-7545)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 24950212 - 24950150
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 207  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  24950212 tttgttatatggaagatgatgaagtttggagttgaggagtcttggagtcaattccttaaaatt 24950150  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 17369690 - 17369747
Alignment:
Q  169 tttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    ||||| |||||||| ||||||| |||||| ||||||||||||||||||| ||||||||    
T  17369690 tttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaa 17369747  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 20770652 - 20770733
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||||||||||| | |||| | | |||||  |||||||||| |||| |||||||||||||||||||||||| | ||||||||    
T  20770652 tttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaa 20770733  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 24950077 - 24949986
Alignment:
Q  325 aattgcagaactaatatggtggtgcaaactgcatttactgtaggaaaaaattggttctattttgatcattatgttgaaagtatggtttcgac 416  Q
    ||||| ||||||||||||||||||| || || |  ||| ||||||||||  ||| |||||||  || |||||||||||||| ||||||||||    
T  24950077 aattggagaactaatatggtggtgccaaatgtaactacggtaggaaaaagatgggtctatttcaataattatgttgaaagtttggtttcgac 24949986  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 6921394 - 6921350
Alignment:
Q  169 tttggtgttgaagagtcttggagtcaattccttaaaattagttat 213  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  6921394 tttggagttgaagaatcttggactcaattccttaaaattagttat 6921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 6947924 - 6947880
Alignment:
Q  169 tttggtgttgaagagtcttggagtcaattccttaaaattagttat 213  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  6947924 tttggagttgaagaatcttggactcaattccttaaaattagttat 6947880  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 14749399 - 14749463
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattag 209  Q
    |||||| |||||| ||||||| | ||||| ||| |||||||||||| ||||||||| ||||||||    
T  14749399 tttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 14749463  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 660915 - 660834
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||||||||||| |||||| | | ||| | |||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  660915 tttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaa 660834  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 29454171 - 29454101
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatca 215  Q
    ||||||||||||  ||||||||| ||||| |||||||| ||||||| ||||||| ||||||||||||||||    
T  29454171 tttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatca 29454101  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 24385208 - 24385284
Alignment:
Q  150 tatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||||||||||||| ||| ||||| |||||| |||||||||||| ||| |||||||||||| |||| | ||||||||    
T  24385208 tatatggaagatgaagaactttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaa 24385284  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 14076683 - 14076761
Alignment:
Q  148 gttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    ||||||||| | |||| | | ||||| |||||||| ||||||| |||||| ||||||||||||||||||| ||||||||    
T  14076683 gttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaa 14076761  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 14386711 - 14386789
Alignment:
Q  148 gttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    ||||||||| | |||| | | ||||| |||||||| ||||||| |||||| ||||||||||||||||||| ||||||||    
T  14386711 gttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaa 14386789  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 19344643 - 19344565
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttc 223  Q
    |||||||||||| |||||||| | ||||| |||||| | ||||||| |||||| ||||||||||||| ||||| |||||    
T  19344643 tttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttc 19344565  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 29431069 - 29430988
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    ||||||||||||  ||||||||| ||||| | | |||| |||||||  ||||||||||||||||||||||||  ||||||||    
T  29431069 tttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaa 29430988  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 19357919 - 19357993
Alignment:
Q  152 tatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||||||||||||| | ||||| ||| |||||||||||| ||||||| | |||||||||| ||||  ||||||||    
T  19357919 tatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagttttcaggatcttcaaa 19357993  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 29922061 - 29921991
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatca 215  Q
    |||||||||||| |||||| ||| ||||| | |||||| ||||||  ||||||||||| ||||||||||||    
T  29922061 tttgttatatggcagatgaagaaatttggggatgaagattcttggtctcaattccttagaattagttatca 29921991  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 6864851 - 6864794
Alignment:
Q  169 tttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    ||||| |||||||||||||||| ||| |||||||||| ||||||||| | ||||||||    
T  6864851 tttggagttgaagagtcttggactcagttccttaaaactagttatcataatcttcaaa 6864794  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 29859439 - 29859536
Alignment:
Q  128 gttacaaggaagatcagtttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaa 225  Q
    |||||||||||  | | || ||||||||| |||||| ||| ||||| |||||||| |||||||  | ||| ||||||||||||||||| | |||||||    
T  29859439 gttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 29874517 - 29874594
Alignment:
Q  149 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||||||| | |||| ||| ||||| |||||||| ||||||| || ||| ||||||||||||||||| | ||||||||    
T  29874517 ttatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttatcaaaatcttcaaa 29874594  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 18514831 - 18514768
Alignment:
Q  169 tttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaagaaatt 232  Q
    ||||| |||||| | ||||||| ||||||||||||||||||||||  || |||||||| |||||    
T  18514831 tttggagttgaaaactcttggactcaattccttaaaattagttatatgaatcttcaaataaatt 18514768  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 19604527 - 19604464
Alignment:
Q  149 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtta 212  Q
    |||||||| |||||| | | ||||| |||||||| || |||| |||||||||||||||||||||    
T  19604527 ttatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtta 19604464  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 20058095 - 20058044
Alignment:
Q  175 gttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    ||||||||||||||| ||||||| ||||||||||||||| | | ||||||||    
T  20058095 gttgaagagtcttggtgtcaatttcttaaaattagttatgaaaatcttcaaa 20058044  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 20414888 - 20414943
Alignment:
Q  149 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaa 204  Q
    ||||||||||||||||||| ||||| | |||  ||||||||| |||||||||||||    
T  20414888 ttatatggaagatgatgaaatttggagatgacaagtcttggactcaattccttaaa 20414943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 29106816 - 29106883
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtta 212  Q
    |||||| ||||| |||||| ||| ||||| |||||||||||||||| |||| |  |||||||||||||    
T  29106816 tttgttgtatggcagatgaagaaatttggggttgaagagtcttggactcaactttttaaaattagtta 29106883  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 15571941 - 15571895
Alignment:
Q  167 agtttggtgttgaagagtcttggagtcaattccttaaaattagttat 213  Q
    ||||||| |||||||||||||||  |||||||| |||||||||||||    
T  15571941 agtttggagttgaagagtcttgggttcaattccataaaattagttat 15571895  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 19722020 - 19722086
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtt 211  Q
    |||||| |||||||||||||| | ||||| ||| |||| ||||||| ||||||||| ||||| ||||    
T  19722020 tttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtt 19722086  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 21210549 - 21210479
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatca 215  Q
    |||||||||||||||||||  |||||||| | |||  ||||||||| || |||||||||| |||| |||||    
T  21210549 tttgttatatggaagatgacaaagtttggagatgacaagtcttggactctattccttaaatttagctatca 21210479  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 22028630 - 22028696
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtt 211  Q
    |||||||||||||| |||| | | | ||| |||||||||||||||| |||||| ||||| |||||||    
T  22028630 tttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagtt 22028696  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 29881273 - 29881339
Alignment:
Q  160 atgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||| ||| ||||| |||||||| ||||||| ||||||||||| ||||||||| || | ||||||||    
T  29881273 atgaagaaatttggggttgaagattcttggactcaattccttagaattagttaccatagtcttcaaa 29881339  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 29899376 - 29899442
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtt 211  Q
    |||||||||||| |||||| ||| ||||| ||||||||||| |||| ||||||  | ||||||||||    
T  29899376 tttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 24002235 - 24002280
Alignment:
Q  179 aagagtcttggagtcaattccttaaaattagttatcagactcttca 224  Q
    |||||||||||| |||||| ||||| ||||||||||||| ||||||    
T  24002235 aagagtcttggactcaattacttaagattagttatcagaatcttca 24002280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 24010419 - 24010464
Alignment:
Q  179 aagagtcttggagtcaattccttaaaattagttatcagactcttca 224  Q
    |||||||||||| |||||| ||||| ||||||||||||| ||||||    
T  24010419 aagagtcttggactcaattacttaagattagttatcagaatcttca 24010464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 24385090 - 24385159
Alignment:
Q  29 aattgttgccccctcaaggttctggtgaaaagttgttggttgagccaactatttgtgtgcttatgaattg 98  Q
    |||||||||||||||||||||||| ||||  |||||||  |||  ||| | |||||||||||||| ||||    
T  24385090 aattgttgccccctcaaggttctgatgaagtgttgttgaatgaaacaagtctttgtgtgcttatggattg 24385159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 24391416 - 24391481
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagt 210  Q
    |||||| |||||||||||| ||| ||||| |||||| | | |||||||||||| ||||| ||||||    
T  24391416 tttgttttatggaagatgaagaactttggagttgaaaaatgttggagtcaatttcttaacattagt 24391481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 29867242 - 29867319
Alignment:
Q  149 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||||||| | |||| ||| || || |||||||| ||||||| ||||||||||| ||||||||| || | ||||||||    
T  29867242 ttatatggcaaatgaagaaattcggggttgaagattcttggactcaattccttagaattagttaccataatcttcaaa 29867319  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 53774842 - 53774919
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactctt 222  Q
    |||||||||||| | |||| | | ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||    
T  53774842 tttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 3565750 - 3565816
Alignment:
Q  149 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatca 215  Q
    |||||||| |||||| | | ||||| |||||||||||||||| |||||| |||||||||||||||||    
T  3565750 ttatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatca 3565816  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 837778 - 837848
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatca 215  Q
    |||||||||||| | |||| ||| ||||||||| |||||||||||| ||||||  |||||||||| |||||    
T  837778 tttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattagctatca 837848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 3557752 - 3557798
Alignment:
Q  169 tttggtgttgaagagtcttggagtcaattccttaaaattagttatca 215  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||    
T  3557752 tttggggttgaagagtcttggactcaatttcttaaaattagttatca 3557798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 3561002 - 3560956
Alignment:
Q  169 tttggtgttgaagagtcttggagtcaattccttaaaattagttatca 215  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||    
T  3561002 tttggggttgaagagtcttggactcaatttcttaaaattagttatca 3560956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 11971050 - 11970969
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||||||||||| | |||| | | ||||| || ||||||||||||| |||||| |||| |||||||||||| | ||||||||    
T  11971050 tttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaa 11970969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 35767020 - 35767083
Alignment:
Q  145 tttgttatatggaagatg-atgaagtttggtgttgaagagtcttggagtcaattccttaaaatta 208  Q
    |||||||||||||||||| | ||| ||||| |||||||||||||||| |||| ||||||||||||    
T  35767020 tttgttatatggaagatggaagaa-tttggagttgaagagtcttggattcaactccttaaaatta 35767083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 53790559 - 53790635
Alignment:
Q  149 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaa 225  Q
    |||||||||||||||  || |||||  ||||| | ||||||| |||||| ||||||||||||| ||||| |||||||    
T  53790559 ttatatggaagatgacaaaatttggatttgaacaatcttggactcaatttcttaaaattagttttcagaatcttcaa 53790635  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 18908877 - 18908798
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttca 224  Q
    ||||||||||||||||||||| | ||||| ||| |||||||||||| ||||||||| |||||||||| ||| | ||||||    
T  18908877 tttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18908798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 18913625 - 18913546
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttca 224  Q
    ||||||||||||||||||||| | ||||| ||| |||||||||||| ||||||||| |||||||||| ||| | ||||||    
T  18913625 tttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18913546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 18920833 - 18920754
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttca 224  Q
    ||||||||||||||||||||| | ||||| ||| |||||||||||| ||||||||| |||||||||| ||| | ||||||    
T  18920833 tttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18920754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 14514903 - 14514983
Alignment:
Q  146 ttgttatatggaagatg-atgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    ||||||||||||| ||| ||||| ||||| |||||||| ||||||| ||||||||||||||||||||||  || ||||||||    
T  14514903 ttgttatatggaaaatggatgaa-tttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaa 14514983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 25377076 - 25377145
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatc 214  Q
    ||||||||||||| ||||| | | ||||| ||| |||||||||||| ||||||  |||||||||||||||    
T  25377076 tttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttatc 25377145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 10205512 - 10205462
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaa 195  Q
    |||||||||||||||||||   ||| |||||||||||||||||||| ||||    
T  10205512 tttgttatatggaagatgactgagtatggtgttgaagagtcttggactcaa 10205462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 3625740 - 3625816
Alignment:
Q  149 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaa 225  Q
    |||||||| | |||| ||| ||||| |||||||||||||||| |||||| ||||||||||||||||| | |||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttcaa 3625816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 25901347 - 25901275
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcaga 217  Q
    |||||||||||||| |||| | | ||| | ||| |||||||||||| ||||||  | ||||||||||||||||    
T  25901347 tttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcaga 25901275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 25915365 - 25915293
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcaga 217  Q
    |||||||||||||| |||| | | ||| | ||| |||||||||||| ||||||  | ||||||||||||||||    
T  25915365 tttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcaga 25915293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 4015032 - 4014966
Alignment:
Q  146 ttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtta 212  Q
    ||||||||||| |||||| ||| ||||| |||||||| ||||||| ||||||||||||| |||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagtta 4014966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 4570929 - 4570997
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttat 213  Q
    |||||||||||| | |||| ||| ||||| |||||||| ||||||| |||||| |||||||||||||||    
T  4570929 tttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 4570997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 39379125 - 39379059
Alignment:
Q  149 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatca 215  Q
    |||||||| |||||| | | ||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  39379125 ttatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttatca 39379059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 4366563 - 4366482
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    |||||| ||||| |||||| ||| || || |||||||||||||||| || ||| |||||| ||||||| |||| ||||||||    
T  4366563 tttgttttatggcagatgaagaaattcggggttgaagagtcttggactccatttcttaaagttagttaccagaatcttcaaa 4366482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 21855451 - 21855384
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtta 212  Q
    |||||||||||| |||||| | | ||||| |||||||| ||||||| |||| |||||||| |||||||    
T  21855451 tttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtta 21855384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 10218987 - 10219065
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttc 223  Q
    |||||| ||||| | |||| ||| |||||  ||||||| ||||||| |||||| |||||||||||||| || |||||||    
T  10218987 tttgttgtatggcaaatgaagaaatttgggattgaagattcttggactcaattacttaaaattagttaccatactcttc 10219065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 28763973 - 28763892
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaaa 226  Q
    ||||||||||||||||||| | | ||||| |||||| |||||||||||| |||||| ||||| || ||||||  ||||||||    
T  28763973 tttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcctcaaaatcagctatcaggatcttcaaa 28763892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 24330967 - 24330900
Alignment:
Q  145 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtta 212  Q
    |||||||||||| |||||| | | ||||| |||||||| ||||||| |||| |||||||| |||||||    
T  24330967 tttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtta 24330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 29597633 - 29597554
Alignment:
Q  132 caaggaagatcagtttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattagtt 211  Q
    |||||||  ||| |||||||||||| | |||||  | ||||| |||||| | ||||||| ||||||||||||||||||||    
T  29597633 caaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagtt 29597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 27618523 - 27618573
Alignment:
Q  175 gttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaa 225  Q
    |||||||||||||||| ||| || |||||| |||||||||||| |||||||    
T  27618523 gttgaagagtcttggactcagttgcttaaagttagttatcagaatcttcaa 27618573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 7489 - 7545
Alignment:
Q  169 tttggtgttgaagagtcttggagtcaattccttaaaattagttatcagactcttcaa 225  Q
    ||||| ||||| |||||||||  |||||||||||||||||| |||| || |||||||    
T  7489 tttggagttgatgagtcttgggttcaattccttaaaattagctatcggaatcttcaa 7545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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