View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10360_high_3 (Length: 406)
Name: NF10360_high_3
Description: NF10360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10360_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 35391984 - 35391589
Alignment:
| Q |
1 |
aacattagtagaaaactcaaacattttagcaaatgtgaaattataatagaggtgagaaaatttaaacggttgattaaaaagcatcaagacatcaagaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35391984 |
aacattagtagaaaactcaaacattttagcaaatgtgaaattataatagaggtgagaaaatctaaacggttgattaaaaagcatcaagacatcaagaagc |
35391885 |
T |
|
| Q |
101 |
caccatgtgtcaacctccaaaacccaaattattaagaaagggtttaagagtttaagcactttcatctcagaagcagccataagtgcttttcaaggtaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35391884 |
caccatgtgtcaacctccaaaacccaaattattaagaaagggtttaagagtttaagcactttcatctcagaagcagccataagtgcttttcaaggtaaga |
35391785 |
T |
|
| Q |
201 |
tcccaactttttcactgcccgttttcccaattccattctgatttcactgttttcccattcagcatctcgagcttttgtttatttcttcgtttttacctgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35391784 |
tcccaactttttcactgcccgttttcccaattccattctgatttcactgttttcccattcagcatctcgggcttttgtttatttcttcgtttttacctgt |
35391685 |
T |
|
| Q |
301 |
ttattgagtttcaagtagttgtatattttcagtattttgacattgatggtgcttaatattgtgcaatatttgaattttaatgctctaagctctctg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35391684 |
ttattgagtttcaagtagttgtatattttcagtattttgacattgatggtgcttaatattgtgcaatatttgaattttaatgctctaagctttctg |
35391589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 167 - 391
Target Start/End: Complemental strand, 3991854 - 3991630
Alignment:
| Q |
167 |
tcagaagcagccataagtgctttt-caaggtaagatcccaactttttcactgcccgttttcccaattccattctgatttcactgttttcccattcagcat |
265 |
Q |
| |
|
||||||||||||| ||| | |||| |||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
3991854 |
tcagaagcagccacaagcgatttttcaaggtaagatcacaactttttcactacccattttcccatttccattctgatttcactgttttcccattcagctt |
3991755 |
T |
|
| Q |
266 |
ctcgagcttttgtttatttcttcgtttttacctgtttattgagtttcaagtagttgtatattttcagtattttgacattgatggtgcttaatattgtgca |
365 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3991754 |
ctttggcttttgtttatttcttcgtttttacctgtttattgggtttcgagtagttgtgtattttcagtattttgacattga-cgtgcttaatattgtgca |
3991656 |
T |
|
| Q |
366 |
atatttgaattttaatgctctaagct |
391 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
3991655 |
agatttgaattttaatgctctaagct |
3991630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 3995527 - 3995414
Alignment:
| Q |
53 |
tgagaaaatttaaacggttgattaaaaagcatcaagacatcaagaagccaccatgtgtcaacctccaaaacccaaattattaaga-aagggtttaagagt |
151 |
Q |
| |
|
||||||||| | ||||||||||| |||| ||| |||||||||| ||||||||| |||||||| |||||||||| ||| | || | |||||||||||||| |
|
|
| T |
3995527 |
tgagaaaatctgaacggttgattcaaaaacattaagacatcaaaaagccaccacgtgtcaacttccaaaaccctaatattaaacacaagggtttaagagt |
3995428 |
T |
|
| Q |
152 |
ttaagcactttcat |
165 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3995427 |
ttaagcactttcat |
3995414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University