View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10360_high_5 (Length: 350)
Name: NF10360_high_5
Description: NF10360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10360_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 27875557 - 27875222
Alignment:
| Q |
1 |
atttcaacttctaagatccagataatataagaaactagcaagaaaaattttcaaggtggtttggttaacacttgacactcatgcattataggagttagtt |
100 |
Q |
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| T |
27875557 |
atttcaacttctaagatccagataatataagaaactagcaagaaaaattttcaaggtggtttggttaacacttgacactcatgcattataggagttagtt |
27875458 |
T |
|
| Q |
101 |
cattttttctttatgaacagttaaatcaaacttaatgcaaaggagttcattttcattccaaaatcttatctactagataacacatcctctcacataagat |
200 |
Q |
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| T |
27875457 |
cattttttctttatgaacagttaaatcaaacttgatgtaaaggagttcattttcattccaaaatcttatctactagataacacatcctctcacataagac |
27875358 |
T |
|
| Q |
201 |
aatacatcttactcgttgtttattcgaaaattgtttgtaactcacctttaattataataatagtaccattttcttacttttatctttgatttagcatttt |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27875357 |
aatacatcttactcattgtttattcgaaaattgtttgcaactcacctttaattataataatagtaccattttcttacttttatctttgatttagcatttt |
27875258 |
T |
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| Q |
301 |
tacatttgttcattcttcttcgaatacatcttacct |
336 |
Q |
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| T |
27875257 |
tacatttgttcattcttcttcgaatacatcttacct |
27875222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 29456774 - 29456836
Alignment:
| Q |
124 |
aatcaaacttaatgcaaaggagttcattttcattccaaaatcttatctactagataacacatc |
186 |
Q |
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| T |
29456774 |
aatcaaacttcatgcaaaggagtttattttcgttccaaaaacttgtctactagataacacatc |
29456836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 24230464 - 24230559
Alignment:
| Q |
124 |
aatcaaacttaatgcaaaggagttcattttcattccaaaatcttatctactagataacacatcctctcacataagataatacatcttactcgttgtt |
220 |
Q |
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| T |
24230464 |
aatcaaactcaatgcaaaggagttcattttcattccaaaaacttgtttgcgtaataaca-atccgccgtcataagataatacatcttactggttgtt |
24230559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 33141446 - 33141385
Alignment:
| Q |
125 |
atcaaacttaatgcaaaggagttcatttt-cattccaaaatcttatctactagataacacat |
185 |
Q |
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||||||||| ||||||| ||||||||||| | |||||||| ||||| || |||||||||||| |
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| T |
33141446 |
atcaaacttcatgcaaaagagttcattttccgttccaaaaacttatatattagataacacat |
33141385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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