View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10360_high_6 (Length: 344)
Name: NF10360_high_6
Description: NF10360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10360_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 219 - 330
Target Start/End: Original strand, 31160977 - 31161088
Alignment:
| Q |
219 |
tatgtgttttagagttgtcaattcagttaaattcatcatttatccaccaaccgtccaacgataaatctttctattcattcattaaacaataaagttatta |
318 |
Q |
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| T |
31160977 |
tatgtgttttagagttgtcaattcagttaaattcatcatttatccaccaaccgtccaacgataaatctttctattcattcattaaacaataaagttatta |
31161076 |
T |
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| Q |
319 |
atggacttcctt |
330 |
Q |
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| T |
31161077 |
atggacttcctt |
31161088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 31160773 - 31160892
Alignment:
| Q |
16 |
agaattcatttttacattgattaagaaatttagttaagtctaactaatttt-ttagattttatgtaaaatataagttggatttactaaaagtgttttgtt |
114 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31160773 |
agaattcatttttacattggttaggaaatttagttaagtctaactaatttttttagattttatgtaaaatataagttggatttactaaaagtgttttgtt |
31160872 |
T |
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| Q |
115 |
tgatatttggtggtaaaagt |
134 |
Q |
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|||||||||||||||||||| |
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| T |
31160873 |
tgatatttggtggtaaaagt |
31160892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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