View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10360_high_7 (Length: 329)
Name: NF10360_high_7
Description: NF10360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10360_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 16929279 - 16928968
Alignment:
| Q |
3 |
gaatatatcgaagatagcactctgaaccaatgtccttaaaatgcatgacaatggaagaaggaagcaatgtccttaaagatatacacagagggatagtcag |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16929279 |
gaatatatggaagatagcactctgaaccattttccttaaaatgcatgacaatggaagaaggaagcaatgtccttaaagatatacacagagggatagtcag |
16929180 |
T |
|
| Q |
103 |
gcatcacttg-tggcacgattgttagcaagagaggctttaagggtcaggtaataatagtccaagatggccacaaactctaaggaatacgtaaagacatgc |
201 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16929179 |
gcatcacttggtggcacgattgttagcaagagaggctttaagggtcaggtaataatagtccaagatggacacaaactctaaggaatacgtaaagacatgc |
16929080 |
T |
|
| Q |
202 |
gacaagtgtcaacgacatggagaaatgcatgtggcaccccgagccaaactcaatgtgatgtcgtgtgatgacaggtcatcttaggtaagcatgtttttcg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16929079 |
gacaagtgtcaacgacatggagaaatgcatgtggca-cccgagccaaactcaatgtgatgtcgtgtgatgacaggtcatcttaggtaagcatgtttttca |
16928981 |
T |
|
| Q |
302 |
gtcattttcagta |
314 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16928980 |
gtcattttcagta |
16928968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University