View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10360_high_9 (Length: 323)
Name: NF10360_high_9
Description: NF10360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10360_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 5054010 - 5054319
Alignment:
| Q |
12 |
atgaaaggaaagaaaagaaaacttggaagggccaccaacacaaaattttaacaatttatgctaaaagatggccaacatgaaattttaacacatgtatgta |
111 |
Q |
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| T |
5054010 |
atgaaaggaaagaaaagaaaacttggaagggccaccaacacaaaattttaacaatttatgctaaaagatggccaacatgaaattttaacacatgtatgta |
5054109 |
T |
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| Q |
112 |
tgcttagaacgaataatatggaaattggaatgaaataaggagaaactaagtaacaggataggatattatttttgtctctggaggcaaaagatgttctaaa |
211 |
Q |
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| T |
5054110 |
tgcttagaaagaataatatggaaattggaatgaaataaggagaaactaagtaacaggataggatattatttttgtctctggaggcaaaatatgttctaaa |
5054209 |
T |
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| Q |
212 |
agtaaacagaattgcttttacctacgaacgatgaatttaagaaaaagaatggcaaaattaaaaacaaacagtagaaggattttataactctacacctatg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |
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| T |
5054210 |
agtaaacagaattgcttttacctacgaacgatgaatttaagaaaaagaatggcaaaattaaaaacaaacagtagatgaattttataactct--acctatg |
5054307 |
T |
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| Q |
312 |
ttgtgaattacc |
323 |
Q |
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| T |
5054308 |
ttgtgaattacc |
5054319 |
T |
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