View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10361_high_1 (Length: 723)
Name: NF10361_high_1
Description: NF10361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10361_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 325 - 552
Target Start/End: Complemental strand, 41048781 - 41048554
Alignment:
| Q |
325 |
ccttcacatcggctatgctaaagcggttattcactgtgacgtgaactctgcaaatatcttgcttgacaagaacctattgactaaagttgctgattttgga |
424 |
Q |
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| T |
41048781 |
ccttcacactggctatgctaaagcggttattcatcgtgacgtgaagtctgcaaatatcttacttgatgagaacctaatggctaaagttgctgattttgga |
41048682 |
T |
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| Q |
425 |
ttgtcaaaaaccagacccgagctcgattaaatgcacgtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaac |
524 |
Q |
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| T |
41048681 |
ttgtcaaaaaccggtcctgagctcgatcaaacgcacgtgagcacggctgtcaaggggagttttgggtaccttgatccagagtatttcaggaggcaacaac |
41048582 |
T |
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| Q |
525 |
tgagggaaaagtctaacgtgtattcctt |
552 |
Q |
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||| ||||| || |||| |||||||| |
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| T |
41048581 |
tgacagaaaaatcagacgtatattcctt |
41048554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 33857495 - 33857624
Alignment:
| Q |
292 |
agcgagtgcattgctcttgactggagtttgttgccttcacatcggctatgctaaagcggttattcactgtgacgtgaactctgcaaatatcttgcttgac |
391 |
Q |
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| T |
33857495 |
agcgagtgcattgctcttgactggagtttgttgccttcacgtcggctatgccaaagcggttattcaccgtgaagtgaactctgcaaatatcttactcgac |
33857594 |
T |
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| Q |
392 |
aagaacctattgactaaagttgctgatttt |
421 |
Q |
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| T |
33857595 |
aagaacctattgcttaaagtttctgatttt |
33857624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 33856926 - 33857016
Alignment:
| Q |
190 |
ggatctattgtcatacatatataaggtttaatcctttttattttattttatattcttcgaccttaatattccaaaacttaatgtttgagtg |
280 |
Q |
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| T |
33856926 |
ggatctattgtcatacatatataatgtttaatcctttttattttattttatattcttcaaccttaatattccaaaactaaatgtttgagtg |
33857016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 579 - 628
Target Start/End: Complemental strand, 33857676 - 33857627
Alignment:
| Q |
579 |
gtacatgttggaaattttgtagaataaaatccatttgactacgctacttt |
628 |
Q |
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| T |
33857676 |
gtacatgttggaatttttgtagaataaaatccatttgactacgctacttt |
33857627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 41044300 - 41044235
Alignment:
| Q |
325 |
ccttcacatcggctatgctaaagcggttattcactgtgacgtgaactctgcaaatatcttgcttga |
390 |
Q |
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| T |
41044300 |
ccttcacagcagcaatgctaaagcgtttattcaccatgacgtgaagtctgcaaatatcttacttga |
41044235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 525
Target Start/End: Complemental strand, 22901567 - 22901367
Alignment:
| Q |
325 |
ccttcacatcggctatgctaaagcggttattcactgtgacgtgaactctgcaaatatcttgcttgacaagaacctattgactaaagttgctgattttgga |
424 |
Q |
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|||||| | ||||||||||||||| |||||||| |||| || || |||||||||||| | ||||| ||||||| || | ||||| || ||||| || |
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| T |
22901567 |
ccttcataccggctatgctaaagcagttattcatcgtgatgtaaagtctgcaaatatcctacttgatgagaacctcatggcaaaagtagccgatttcggg |
22901468 |
T |
|
| Q |
425 |
ttgtcaaaaaccagacccgagctcgattaaatgcacgtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaac |
524 |
Q |
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| T |
22901467 |
ctatcaaagaccggaccggagattgatcaaacgcatgtgagcacagctgtcaaagggagtttcggctaccttgatccggaatatttcagaaggcaacaac |
22901368 |
T |
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| Q |
525 |
t |
525 |
Q |
| |
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| T |
22901367 |
t |
22901367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 525
Target Start/End: Complemental strand, 22953235 - 22953035
Alignment:
| Q |
325 |
ccttcacatcggctatgctaaagcggttattcactgtgacgtgaactctgcaaatatcttgcttgacaagaacctattgactaaagttgctgattttgga |
424 |
Q |
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|||||| | ||||||||||||||| |||||||| |||| || || |||||||||||| | ||||| ||||||| || | ||||| || ||||| || |
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| T |
22953235 |
ccttcataccggctatgctaaagcagttattcatcgtgatgtaaagtctgcaaatatcctacttgatgagaacctcatggcaaaagtagccgatttcggg |
22953136 |
T |
|
| Q |
425 |
ttgtcaaaaaccagacccgagctcgattaaatgcacgtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaac |
524 |
Q |
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| T |
22953135 |
ctatcaaagaccggaccggagattgatcaaacgcatgtgagcacagctgtcaaagggagtttcggctaccttgatccggaatatttcagaaggcaacaac |
22953036 |
T |
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| Q |
525 |
t |
525 |
Q |
| |
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|
| T |
22953035 |
t |
22953035 |
T |
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