View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10361_high_12 (Length: 347)
Name: NF10361_high_12
Description: NF10361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10361_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 25553589 - 25553926
Alignment:
| Q |
1 |
ttccctacaatcaagaaccgtagtatatataccagtattaatgcataaaaatcatatagaaaataaatttaaaattattgatcgatgattcaaaaccgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25553589 |
ttccctacaatcaagaaccgtagtatatataccagtattaatgcataaaaatcatatagaaaataaatttaaaattattgatcgatgattcaaaaccgta |
25553688 |
T |
|
| Q |
101 |
gtattaaaccgtgaaattggacaataatgcagacacacttgg-nnnnnnnttaaaattattgatcaaaatcggagagctgagacttatttttagtcgcta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25553689 |
gtattaaaccgtgaaattggacaataatgcagacacactcggaaaaaaaattaaaattattgatcaaaatcggagagctgagatttatttttagtcgcta |
25553788 |
T |
|
| Q |
200 |
gttgacaaaaggagatccataataatcttgacaaaaactacacattagaactt---nnnnnnntgagggtgtcatcatgatttcgtca---aatgactca |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||| ||||| ||| |
|
|
| T |
25553789 |
gttgacaaaaggagatccataataatcttgacaaaaactacactttagagcttcaaaaaaaaacgaaggtgtcatcatgatttcgtcaaacaatgattca |
25553888 |
T |
|
| Q |
294 |
aaacaagcatgtcatgtgtttaaagtgtaaacatgtgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25553889 |
aaacaagcatgtcatgtgtttaaagtgtaaacatgtgt |
25553926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University