View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10361_high_15 (Length: 334)

Name: NF10361_high_15
Description: NF10361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10361_high_15
NF10361_high_15
[»] chr4 (6 HSPs)
chr4 (76-131)||(15562160-15562215)
chr4 (76-135)||(43365841-43365900)
chr4 (76-135)||(44363351-44363410)
chr4 (101-135)||(12499057-12499091)
chr4 (213-241)||(14015925-14015953)
chr4 (79-135)||(51871618-51871674)
[»] chr8 (3 HSPs)
chr8 (58-135)||(32089237-32089315)
chr8 (102-140)||(20771462-20771500)
chr8 (102-140)||(20781256-20781294)
[»] chr6 (2 HSPs)
chr6 (100-135)||(10244541-10244576)
chr6 (104-136)||(28587657-28587689)
[»] chr7 (4 HSPs)
chr7 (101-134)||(44858069-44858102)
chr7 (101-140)||(23416137-23416175)
chr7 (101-135)||(27567859-27567893)
chr7 (58-126)||(45871759-45871828)
[»] chr5 (2 HSPs)
chr5 (102-135)||(3577779-3577812)
chr5 (102-135)||(14626244-14626277)
[»] chr1 (2 HSPs)
chr1 (76-129)||(26767667-26767720)
chr1 (101-134)||(42508298-42508331)
[»] chr3 (1 HSPs)
chr3 (103-135)||(39450662-39450694)
[»] scaffold0157 (1 HSPs)
scaffold0157 (101-135)||(21386-21420)
[»] chr2 (3 HSPs)
chr2 (103-135)||(964093-964125)
chr2 (103-135)||(40609912-40609944)
chr2 (101-133)||(42006401-42006433)


Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 15562215 - 15562160
Alignment:
Q  76 tttagacaaattattatatagaaaaaccaaaactgtcaaattttaaaataggggga 131  Q
    |||||||||||||||| |||||   |||||||||||||||||||||||||||||||    
T  15562215 tttagacaaattattagatagagggaccaaaactgtcaaattttaaaataggggga 15562160  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 43365900 - 43365841
Alignment:
Q  76 tttagacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggggaccaa 135  Q
    |||||||||| ||||| |||||  ||||||||||||| |||||||||||| | |||||||    
T  43365900 tttagacaaaatattagatagaggaaccaaaactgtcgaattttaaaatatgaggaccaa 43365841  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 44363351 - 44363410
Alignment:
Q  76 tttagacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggggaccaa 135  Q
    |||||||||| |||| ||||||   ||||||| |||| ||||||||||||||||||||||    
T  44363351 tttagacaaaatattttatagagggaccaaaattgtcgaattttaaaatagggggaccaa 44363410  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 12499091 - 12499057
Alignment:
Q  101 accaaaactgtcaaattttaaaatagggggaccaa 135  Q
    |||||||||||| ||||||||||||||||||||||    
T  12499091 accaaaactgtcgaattttaaaatagggggaccaa 12499057  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 14015953 - 14015925
Alignment:
Q  213 atgttcagcaagtagcttcaattctcttg 241  Q
    |||||||||||||||||||||||||||||    
T  14015953 atgttcagcaagtagcttcaattctcttg 14015925  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 51871674 - 51871618
Alignment:
Q  79 agacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggggaccaa 135  Q
    ||||||||||||| ||||| | || ||| |||||||||||||||||| || ||||||    
T  51871674 agacaaattattagatagagagactaaagctgtcaaattttaaaatacggagaccaa 51871618  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 32089237 - 32089315
Alignment:
Q  58 acatgttatatcaccttcttta-gacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggggaccaa 135  Q
    ||||||||||||||| | |||| |||||||||||| ||||| | |||||||||||| || || ||||||||||||||||    
T  32089237 acatgttatatcaccatatttaagacaaattattagatagagagaccaaaactgtcgaacttcaaaatagggggaccaa 32089315  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 20771500 - 20771462
Alignment:
Q  102 ccaaaactgtcaaattttaaaatagggggaccaaaactg 140  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  20771500 ccaaaattgtcaacttttaaaatagggggaccaaaactg 20771462  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 20781294 - 20781256
Alignment:
Q  102 ccaaaactgtcaaattttaaaatagggggaccaaaactg 140  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  20781294 ccaaaattgtcaacttttaaaatagggggaccaaaactg 20781256  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 10244541 - 10244576
Alignment:
Q  100 aaccaaaactgtcaaattttaaaatagggggaccaa 135  Q
    ||||||||||||||||||||||||||||||||||||    
T  10244541 aaccaaaactgtcaaattttaaaatagggggaccaa 10244576  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 28587689 - 28587657
Alignment:
Q  104 aaaactgtcaaattttaaaatagggggaccaaa 136  Q
    ||||||||| |||||||||||||||||||||||    
T  28587689 aaaactgtcgaattttaaaatagggggaccaaa 28587657  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 44858069 - 44858102
Alignment:
Q  101 accaaaactgtcaaattttaaaatagggggacca 134  Q
    ||||||||||||||||||||||||||||||||||    
T  44858069 accaaaactgtcaaattttaaaatagggggacca 44858102  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 23416137 - 23416175
Alignment:
Q  101 accaaaactgtcaaattttaaaatagggggaccaaaactg 140  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  23416137 accaaaactgtcaaattttaaaata-ggggaccaaaactg 23416175  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 27567859 - 27567893
Alignment:
Q  101 accaaaactgtcaaattttaaaatagggggaccaa 135  Q
    |||||||||||| ||||||||||||||||||||||    
T  27567859 accaaaactgtcgaattttaaaatagggggaccaa 27567893  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 45871828 - 45871759
Alignment:
Q  58 acatgttatatcaccttcttt-agacaaattattatatagaaaaaccaaaactgtcaaattttaaaatag 126  Q
    ||||||||||||||| | ||| ||||||| |||||||||||   |||||||||||  |||||||||||||    
T  45871828 acatgttatatcaccatattttagacaaaatattatatagagggaccaaaactgttgaattttaaaatag 45871759  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 3577779 - 3577812
Alignment:
Q  102 ccaaaactgtcaaattttaaaatagggggaccaa 135  Q
    ||||||||||||||||||||||||||||||||||    
T  3577779 ccaaaactgtcaaattttaaaatagggggaccaa 3577812  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 14626277 - 14626244
Alignment:
Q  102 ccaaaactgtcaaattttaaaatagggggaccaa 135  Q
    |||||||||||||||||||||||||| |||||||    
T  14626277 ccaaaactgtcaaattttaaaataggaggaccaa 14626244  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 26767720 - 26767667
Alignment:
Q  76 tttagacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggg 129  Q
    |||||||||| ||| |||||||   |||||||||||||||||||||||||||||    
T  26767720 tttagacaaaatataatatagagggaccaaaactgtcaaattttaaaatagggg 26767667  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 42508331 - 42508298
Alignment:
Q  101 accaaaactgtcaaattttaaaatagggggacca 134  Q
    |||||||||||| |||||||||||||||||||||    
T  42508331 accaaaactgtcgaattttaaaatagggggacca 42508298  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 39450694 - 39450662
Alignment:
Q  103 caaaactgtcaaattttaaaatagggggaccaa 135  Q
    |||||||||||||||||||||||||||||||||    
T  39450694 caaaactgtcaaattttaaaatagggggaccaa 39450662  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 21386 - 21420
Alignment:
Q  101 accaaaactgtcaaattttaaaatagggggaccaa 135  Q
    |||||||||||| ||||||||||||||||||||||    
T  21386 accaaaactgtcgaattttaaaatagggggaccaa 21420  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 964093 - 964125
Alignment:
Q  103 caaaactgtcaaattttaaaatagggggaccaa 135  Q
    |||||||||| ||||||||||||||||||||||    
T  964093 caaaactgtcgaattttaaaatagggggaccaa 964125  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 40609912 - 40609944
Alignment:
Q  103 caaaactgtcaaattttaaaatagggggaccaa 135  Q
    ||||||| |||||||||||||||||||||||||    
T  40609912 caaaactctcaaattttaaaatagggggaccaa 40609944  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 42006433 - 42006401
Alignment:
Q  101 accaaaactgtcaaattttaaaatagggggacc 133  Q
    ||||||||||||||||||||||||||| |||||    
T  42006433 accaaaactgtcaaattttaaaataggaggacc 42006401  T

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