View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10361_high_20 (Length: 315)
Name: NF10361_high_20
Description: NF10361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10361_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 37704454 - 37704716
Alignment:
| Q |
7 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
106 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
37704553 |
T |
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| Q |
107 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
206 |
Q |
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| T |
37704554 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
37704653 |
T |
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| Q |
207 |
gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacag |
269 |
Q |
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| T |
37704654 |
gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacag |
37704716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 37698974 - 37699238
Alignment:
| Q |
8 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
105 |
Q |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
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| Q |
106 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc |
204 |
Q |
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| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc |
37699173 |
T |
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| Q |
205 |
acgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatca |
266 |
Q |
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| T |
37699174 |
actaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatca |
37699238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 37437520 - 37437778
Alignment:
| Q |
7 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
106 |
Q |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa |
37437618 |
T |
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| Q |
107 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagca |
205 |
Q |
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| T |
37437619 |
ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc- |
37437717 |
T |
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| Q |
206 |
cgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatca |
266 |
Q |
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| T |
37437718 |
---aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatca |
37437778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 37698636 - 37698864
Alignment:
| Q |
7 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
106 |
Q |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaa |
37698718 |
T |
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| Q |
107 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta--- |
202 |
Q |
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| T |
37698719 |
ttggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatt |
37698810 |
T |
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| Q |
203 |
-gcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta |
255 |
Q |
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| T |
37698811 |
agcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta |
37698864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 16841109 - 16840970
Alignment:
| Q |
135 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
233 |
Q |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
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| Q |
234 |
g------ataagataacaaattcatttaagtagcaatcaca |
268 |
Q |
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| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcaca |
16840970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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