View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10361_high_21 (Length: 312)

Name: NF10361_high_21
Description: NF10361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10361_high_21
NF10361_high_21
[»] chr1 (2 HSPs)
chr1 (6-170)||(9375661-9375825)
chr1 (168-265)||(30436104-30436201)
[»] chr3 (2 HSPs)
chr3 (165-290)||(14546854-14546979)
chr3 (38-98)||(3400078-3400138)
[»] chr5 (3 HSPs)
chr5 (6-126)||(24549958-24550079)
chr5 (5-133)||(16842525-16842657)
chr5 (18-83)||(24509992-24510057)
[»] chr2 (3 HSPs)
chr2 (6-127)||(35655907-35656029)
chr2 (166-290)||(11883411-11883534)
chr2 (204-265)||(12095212-12095273)
[»] chr4 (3 HSPs)
chr4 (6-133)||(12607289-12607417)
chr4 (6-94)||(21678724-21678812)
chr4 (37-127)||(4078917-4079008)
[»] chr6 (3 HSPs)
chr6 (6-113)||(13281083-13281190)
chr6 (6-98)||(31124679-31124771)
chr6 (5-70)||(13483826-13483891)
[»] scaffold0161 (1 HSPs)
scaffold0161 (15-81)||(5565-5631)
[»] chr7 (1 HSPs)
chr7 (6-83)||(17881854-17881931)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 9375661 - 9375825
Alignment:
Q  6 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttctagggtga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9375661 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatactattgagagggtatttcctttctagggtga 9375760  T
Q  106 atacccccagatgtaggtgacgatgcacgttatcaatctcttgtgttctactttatcgcaattta 170  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9375761 atacccccagatataggtgacgatgcacgttatcaatctcttgtgttctactttatcgcaattta 9375825  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 30436201 - 30436104
Alignment:
Q  168 ttaatcagagaaatcacagtcgttgagaattatcataaaaa-tgataaaaacatagaacatcggagaagaagaagaaatataagacatcattgacgatt 265  Q
    ||||||| |||||||||| ||||| |||||||||||||||| |||||||| ||||| |||||  |||||||| |||||||||||||||||||| |||||    
T  30436201 ttaatcaaagaaatcacactcgtt-agaattatcataaaaaatgataaaagcatagcacatcacagaagaagtagaaatataagacatcattgtcgatt 30436104  T

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Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 165 - 290
Target Start/End: Complemental strand, 14546979 - 14546854
Alignment:
Q  165 aatttaatcagagaaatcacagtcgttgagaattatcataaaaatgataaaaacatagaacatcggagaagaagaagaaatataagacatcattgacgat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14546979 aatttaatcagagaaatcacagtcgttgagaattatcataaaaatgataaaaacatagaacatcggagaagaagaagaaatataagacatcattgacgat 14546880  T
Q  265 tcccactctttcacaattgtgatgat 290  Q
    ||||||||||||||||||||||||||    
T  14546879 tcccactctttcacaattgtgatgat 14546854  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 3400078 - 3400138
Alignment:
Q  38 tgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttct 98  Q
    |||||| |||||||||||||||||||| ||||||||  ||||||||| | |||||||||||    
T  3400078 tgaacacagtttgttcacataagactaggaactaatgctattgagagtggatttcctttct 3400138  T

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Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 24550079 - 24549958
Alignment:
Q  6 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttctagggtga 105  Q
    ||||| |||||| ||||||| ||||| ||  ||||||||||||||||||||||||||||  |||| ||||||||||||| | ||||||||||||||||||    
T  24550079 aaatatacgggtggtattagatgaagaggcagtgaacaaagtttgttcacataagactagaaactgatattattgagagtggatttcctttctagggtga 24549980  T
Q  106 at-acccccagatgtaggtgac 126  Q
    ||  ||||||||||||| ||||    
T  24549979 atgccccccagatgtagatgac 24549958  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 16842657 - 16842525
Alignment:
Q  5 aaaatacacgggtagtattaggt---gaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttctagg 101  Q
    ||||| |||||||||||||||||   |||  ||  |||||||| |||||||||||||||||||  |||||||||||||||||| | ||||||||||| ||    
T  16842657 aaaattcacgggtagtattaggtactgaaaaggcagtgaacaaggtttgttcacataagactagaaactaatattattgagagtgaatttcctttcttgg 16842558  T
Q  102 -gtgaatacccccagatgtaggtgacgatgcac 133  Q
      || || || |||||||||||||||| |||||    
T  16842557 catggatgcctccagatgtaggtgacgttgcac 16842525  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 24510057 - 24509992
Alignment:
Q  18 agtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgaga 83  Q
    |||||||||||||| ||| |||||||| ||||||| ||||||||||| ||||| ||| ||||||||    
T  24510057 agtattaggtgaagaggaagtgaacaaggtttgttaacataagactaggaactgatactattgaga 24509992  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 35656029 - 35655907
Alignment:
Q  6 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttctagggtga 105  Q
    |||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||| ||| | ||| |||| |||| | ||||| ||| | |||||     
T  35656029 aaatacacaggtagtattaggtgaagaggaagtgaacaaggtttgttcacataagactaggaattgatactatttagagtgaatttctttttttgggtgg 35655930  T
Q  106 atacccc-cagatgtaggtgacg 127  Q
    || |||| |||||||||||||||    
T  35655929 attcccctcagatgtaggtgacg 35655907  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 11883411 - 11883534
Alignment:
Q  166 atttaatcagagaaatcacagtcgttgagaattatcataaaaatgataaaaacatagaacatcggagaagaagaagaaatataagacatcattgacgatt 265  Q
    ||||||||| |||||||||||| ||||| |||||| |||||||  || ||||||||| ||| |  | |||||| ||||||||||||| || |||| ||||    
T  11883411 atttaatcaaagaaatcacagttgttgaaaattattataaaaaatat-aaaacatagcacaacaaataagaagtagaaatataagacttcgttgatgatt 11883509  T
Q  266 cccactctttcacaattgtgatgat 290  Q
      |  ||  ||||||||||||||||    
T  11883510 ttcgttcaatcacaattgtgatgat 11883534  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 12095273 - 12095212
Alignment:
Q  204 aaaaatgataaaaacatagaacatcggagaagaagaagaaatataagacatcattgacgatt 265  Q
    ||||||||||||||||||| ||| | || |||||| |||||||||  ||||| |||||||||    
T  12095273 aaaaatgataaaaacatagcacaacagataagaagtagaaatatagcacatcgttgacgatt 12095212  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 12607417 - 12607289
Alignment:
Q  6 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttctagg-gtg 104  Q
    ||||||||||||| |||||||||||| ||   ||||||| ||||||||||||||||||| ||||||||| |||| |||  | ||||||||||| ||  ||    
T  12607417 aaatacacgggtaatattaggtgaagaggcactgaacaaggtttgttcacataagactaggaactaatactatttagaatggatttcctttcttggcatg 12607318  T
Q  105 aatacccccagatgtaggtgacgatgcac 133  Q
     || || |||||||||||||||| |||||    
T  12607317 gatgcctccagatgtaggtgacgttgcac 12607289  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 21678724 - 21678812
Alignment:
Q  6 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcct 94  Q
    ||||||| ||||||| |||| ||||  ||  |||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||||    
T  21678724 aaatacatgggtagtgttagatgaaaaggcggtgaacaaagtttgttcacataagactaggaactaatactattgagagtgaatttcct 21678812  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 4078917 - 4079008
Alignment:
Q  37 gtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttctag-ggtgaatacccccagatgtaggtgacg 127  Q
    |||||||| || |||||||||||||||| ||||| ||| |||||||||   ||||||||||| |   ||||| || ||||||||||||||||    
T  4078917 gtgaacaaggtgtgttcacataagactaggaactgatactattgagagttaatttcctttcttgacatgaatgcctccagatgtaggtgacg 4079008  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 13281083 - 13281190
Alignment:
Q  6 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttctagggtga 105  Q
    ||||||||||||| |||||||||||| ||   ||||||| ||||||||||||  ||||| ||||| ||| ||||||||| | ||||||||||| |||||     
T  13281083 aaatacacgggtattattaggtgaagaggtaatgaacaaggtttgttcacatgtgactaggaactgatactattgagagtgaatttcctttcttgggtgg 13281182  T
Q  106 ataccccc 113  Q
    || |||||    
T  13281183 atgccccc 13281190  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 31124679 - 31124771
Alignment:
Q  6 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgagagggtatttcctttct 98  Q
    ||||||||| |||||||||||||||| ||   ||||||| |||||||||||||||||||| || ||||| |||||| |  ||||||| |||||    
T  31124679 aaatacacgtgtagtattaggtgaagaggtaatgaacaaggtttgttcacataagactaaaaattaatactattgataatgtatttcatttct 31124771  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 13483891 - 13483826
Alignment:
Q  5 aaaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaact 70  Q
    ||||| ||||| ||||||||||||||| |    ||||||| |||||||||||||||| ||||||||    
T  13483891 aaaattcacggatagtattaggtgaagagacaatgaacaaggtttgttcacataagattaagaact 13483826  T

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Target: scaffold0161 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 5565 - 5631
Alignment:
Q  15 ggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattga 81  Q
    ||||||||||||||||| |   |||||||| ||||| ||||||||||||| ||||||||| ||||||    
T  5565 ggtagtattaggtgaagagacagtgaacaaggtttgctcacataagactatgaactaatactattga 5631  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 17881931 - 17881854
Alignment:
Q  6 aaatacacgggtagtattaggtgaagtggatgtgaacaaagtttgttcacataagactaagaactaatattattgaga 83  Q
    ||||||||  ||| |||||||||||| ||  |||| ||| |||||||||||||||| || || |||||| ||||||||    
T  17881931 aaatacacatgtaatattaggtgaagaggcagtgaccaaggtttgttcacataagagtaggagctaatactattgaga 17881854  T

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