View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10361_high_5 (Length: 419)
Name: NF10361_high_5
Description: NF10361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10361_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 29 - 397
Target Start/End: Complemental strand, 52251085 - 52250717
Alignment:
| Q |
29 |
cttataatgatgatcaagttttggagaaatctgtaatgtatcagagagctatgacagggaatttgaaagattcttgggttgttggaaatcctgggttccc |
128 |
Q |
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| T |
52251085 |
cttataatgatgatcaagttttggagaaatctgtaatgtatcagagagctatgacagggaatttgaaagattcttgggttgttggaaattctgggttccc |
52250986 |
T |
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| Q |
129 |
attgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaag |
228 |
Q |
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| T |
52250985 |
tttgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaag |
52250886 |
T |
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| Q |
229 |
gatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttt |
328 |
Q |
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| T |
52250885 |
gatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttt |
52250786 |
T |
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| Q |
329 |
tgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaactttttgatgatg |
397 |
Q |
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| T |
52250785 |
tgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaactttttgatgatg |
52250717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 89 - 397
Target Start/End: Complemental strand, 52262667 - 52262360
Alignment:
| Q |
89 |
atttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgc |
188 |
Q |
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| T |
52262667 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
52262568 |
T |
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| Q |
189 |
gtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaag |
288 |
Q |
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| T |
52262567 |
gtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaa |
52262468 |
T |
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| Q |
289 |
attgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaacttt |
388 |
Q |
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| T |
52262467 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgagaaatgagaagatggat-ctggatggaattttgaattgt |
52262369 |
T |
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| Q |
389 |
ttgatgatg |
397 |
Q |
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| T |
52262368 |
ttgatgatg |
52262360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 370
Target Start/End: Original strand, 3698867 - 3698992
Alignment:
| Q |
245 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
344 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||| | | || ||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
3698867 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtga |
3698966 |
T |
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| Q |
345 |
aatgaggaatgagaagatggatcctg |
370 |
Q |
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| T |
3698967 |
gatgaaaggtgagaaaatggatcctg |
3698992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 370
Target Start/End: Original strand, 3702555 - 3702680
Alignment:
| Q |
245 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
344 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
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| T |
3702555 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
3702654 |
T |
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| Q |
345 |
aatgaggaatgagaagatggatcctg |
370 |
Q |
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| T |
3702655 |
gatgaaaggtgagaaaatggatcctg |
3702680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 397
Target Start/End: Original strand, 17602848 - 17602944
Alignment:
| Q |
301 |
cctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaactttttgatgatg |
397 |
Q |
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| T |
17602848 |
cctgttgttcttggtgcttgttgtgtgcttcataatatttgtgagattatgaatgaagaaatggatgatgaatggaagtttgaggtttttgatgatg |
17602944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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