View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10361_high_7 (Length: 381)
Name: NF10361_high_7
Description: NF10361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10361_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 103 - 359
Target Start/End: Original strand, 53367043 - 53367299
Alignment:
| Q |
103 |
gtgtaagttgatttccctgctcatcttcatcagcaattacaattcttaaagcagcataattaggtggaggactccatgtcttccttgtactagttgttgt |
202 |
Q |
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| T |
53367043 |
gtgtaagttgatttccctgctcatcttcatcagcaattacaattcttaaagcagcataattaggtggaggactccatgtcttccttgtactagttgttgt |
53367142 |
T |
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| Q |
203 |
atctgtttgataaactacatcatcactatttctagaatcggcatctgcttttatttctattgcgtaatctttgtctttgttaacagcaacagcatccaca |
302 |
Q |
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| T |
53367143 |
atctgtttgataaactacatcatcactatttctagaatcggcatctgcttttatttctattgcgtaatctctgtctttgttaacggcaacagcatccaca |
53367242 |
T |
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| Q |
303 |
gaagccttttcattagtagaaccatcccagcggtaaaaagcatttacatttacattt |
359 |
Q |
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| T |
53367243 |
gaagccttttcattagtagaaccatcccaacggtaaaaagcatttacatttacattt |
53367299 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3642368 - 3642325
Alignment:
| Q |
1 |
ggaatcttgtttgaaaatataaatatacatctaataaatcactg |
44 |
Q |
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| T |
3642368 |
ggaatgttgtttgaaaatataaatatacatctaataaatcactg |
3642325 |
T |
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