View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10361_high_9 (Length: 355)
Name: NF10361_high_9
Description: NF10361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10361_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 183 - 343
Target Start/End: Complemental strand, 28916773 - 28916613
Alignment:
| Q |
183 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatca |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916773 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatca |
28916674 |
T |
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| Q |
283 |
tccataagtactgccnnnnnnnccagctttttgaccccaacaaaaagaagatggtaatctg |
343 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
28916673 |
tccataagtactgccaaaaaaaccagctttttgaccccaagaaaaagaagatggtaatctg |
28916613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 28892407 - 28892245
Alignment:
| Q |
183 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatca |
282 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28892407 |
gattttgttggatggggttcaagaagtctcgtagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcaatca |
28892308 |
T |
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| Q |
283 |
tccataagtactgccnnnnnnnccagctttttgaccccaacaaaaagaagatggtaatctgtg |
345 |
Q |
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|| ||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |
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| T |
28892307 |
tcagtaagtactgccacaaaaaccagctttttgaccccaagaaaaagaagaaggtaatctgtg |
28892245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 28916948 - 28916836
Alignment:
| Q |
5 |
tgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916948 |
tgacttggaaccgtatgaaagaggtgagggggaagat---accggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacg |
28916852 |
T |
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| Q |
105 |
tcaagagttaaaccag |
120 |
Q |
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|||||||||||||||| |
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| T |
28916851 |
tcaagagttaaaccag |
28916836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 183 - 334
Target Start/End: Complemental strand, 28925999 - 28925848
Alignment:
| Q |
183 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatca |
282 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28925999 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
28925900 |
T |
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| Q |
283 |
tccataagtactgccnnnnnnnccagctttttgaccccaacaaaaagaagat |
334 |
Q |
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|| || | ||||||| |||||||||||||||||| ||||||||||| |
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| T |
28925899 |
tcaatgattactgccacaaacaccagctttttgaccccaagaaaaagaagat |
28925848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 28902361 - 28902199
Alignment:
| Q |
183 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatca |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| || || ||| |||||||||||| ||||| |
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| T |
28902361 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacacgactgaagcgttgtctgaacttgatgttgcttggatca |
28902262 |
T |
|
| Q |
283 |
tccataagtactgccnnnnnnnccagctttttgaccccaacaaaaagaagatggtaatctgtg |
345 |
Q |
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|| ||||||||| |||||||||||||||||| ||||||||||| ||||| |||| |
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| T |
28902261 |
tcatccagtactgccacacaaaccagctttttgaccccaagaaaaagaagatcgtaatttgtg |
28902199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 28902527 - 28902437
Alignment:
| Q |
26 |
aggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacgtcaagagttaaa |
116 |
Q |
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||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
28902527 |
aggtgagggggaagacgatactggtgaatctgatgcgagtgactttataggttctgattgtgatgacttggttggcacgtcaagagttaaa |
28902437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 28926183 - 28926072
Alignment:
| Q |
5 |
tgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacg |
104 |
Q |
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|
||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||| ||||||| ||||||||| | || ||| |
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| T |
28926183 |
tgacttggatccgtatgaaataggtgagggggaagatgatactggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgaaacg |
28926084 |
T |
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| Q |
105 |
tcaagagttaaa |
116 |
Q |
| |
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|||||||||||| |
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| T |
28926083 |
tcaagagttaaa |
28926072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 28935601 - 28935507
Alignment:
| Q |
186 |
tttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgat |
280 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||| ||| | ||| ||||||||||||||| |
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| T |
28935601 |
tttgttggatggggttcaagaagtctcatagattttcttaaagatattggtagagacacggcaaaagcatttacggaacatgatgttgcttcgat |
28935507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 28892581 - 28892515
Alignment:
| Q |
18 |
tatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgatt |
84 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||| ||| |||| |||| |||||||| |
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| T |
28892581 |
tatgaaataggtgagggggaagatgataccggtgagtctgatgtcagtaacttcatagattctgatt |
28892515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 28935748 - 28935692
Alignment:
| Q |
36 |
gaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgac |
92 |
Q |
| |
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||||||||| | ||||| ||||||| ||| |||||||||||||||||| ||||||| |
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|
| T |
28935748 |
gaagatgatgctggtgactctgatgtgagttactttataggttctgattgtgacgac |
28935692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 34009581 - 34009511
Alignment:
| Q |
5 |
tgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttatag |
75 |
Q |
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||||||||| || |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
34009581 |
tgacttggatccatatgaagtaggtgagggggaagatgatactggtgaatctgatgtgagtgactttatag |
34009511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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