View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10362_high_1 (Length: 615)
Name: NF10362_high_1
Description: NF10362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10362_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 21 - 605
Target Start/End: Complemental strand, 33996010 - 33995428
Alignment:
| Q |
21 |
attagacagtcttcactgagttgtacatcctcttcatatcctttagctagatatccttcatgtgttgtttgattcatcattctccactacagcccattta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33996010 |
attagacagtcttcactgagttgtacatcctcttcatatcctttagctagatatccttcatgtgttgtttgattcatcattctccactacagcccattta |
33995911 |
T |
|
| Q |
121 |
ttaacacgatttcgtgcaatctcaacctgtaaaatacatatgatatttttagcttcttaaaattataagaaacggatatcaatcaatttcacaattatag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33995910 |
ttaacacgatttcgtgcaatctcaacctgtaaaatacatatgatatttttagcttcttaaaattataagaaacggatatcaatcaatttcacaattatag |
33995811 |
T |
|
| Q |
221 |
actatagtaaattgattacagacctgcttgtcccagtcagtcttaaatgtgattgtgataagcattatggtttgaacaaatgttccaaacaacattccaa |
320 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33995810 |
actatagtaaattgattactgacctgcttgtcccagtcagtcttaaatgtgattgtgataagcattatggtttgaacaaatgttccaaacaacattccaa |
33995711 |
T |
|
| Q |
321 |
tccaaacaccctacaaaagtgacatgggaatatatatttaattattatgcgatatgggaagcactcactagtctctctttaaatttatatgtggatccca |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33995710 |
tccaaacaccctacaaaagtgacatgggaatatatatttaattattatgcgatatgggaag----cactagtctctctttaaatttatatgtggatccca |
33995615 |
T |
|
| Q |
421 |
ttttctatttgg--tatatatatttgtcaaaaaactaatggattccaaccaattgcagttgatataaatgattagacatttcatgaaattcatggtagtg |
518 |
Q |
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| T |
33995614 |
ttttctatttggtatatatatatttgtcaaaaaactaatggattccaacctattgcagttgatataaatgattagacatttcatgaaattcatggtagtg |
33995515 |
T |
|
| Q |
519 |
acttgagttttagtccatgatttcataaatgataggtttcaagttaaattttattctaaatcttcaatgacgacgatgtatctcatt |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33995514 |
acttgagttttagtccatgatttcataaatgataggttttaagttaaattttattctaaatcttcaatgacaacgatgtatctcatt |
33995428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 33986953 - 33986832
Alignment:
| Q |
51 |
tcttcatatcctttagctagatatccttcatgtgttgtttgattcatcattctccactacagcccatttattaacacgatttcgtgcaatctcaacctgt |
150 |
Q |
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|||| |||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33986953 |
tcttgatattctttagctagatatccttgatgtgttgtttgattcatctttatccactacagcccatttattaacacgatttcgagcaatctcaacctgt |
33986854 |
T |
|
| Q |
151 |
aaaatacatatgatatttttag |
172 |
Q |
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||||| |||||| |||||||| |
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| T |
33986853 |
aaaatccatatgtaatttttag |
33986832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 33986781 - 33986686
Alignment:
| Q |
242 |
acctgcttgtcccagtcagtcttaaatgtgattgtgataagcattatggtttgaacaaatgttccaaacaacattccaatccaaacaccctacaaa |
337 |
Q |
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|||||||||| ||||||||| || |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
33986781 |
acctgcttgttccagtcagttttgaatgtgataatcataagcattatggtttgaacaaaaattccaaacaacattccaatccaaacaccctgcaaa |
33986686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 333
Target Start/End: Original strand, 9214458 - 9214549
Alignment:
| Q |
242 |
acctgcttgtcccagtcagtcttaaatgtgattgtgataagcattatggtttgaacaaatgttccaaacaacattccaatccaaacacccta |
333 |
Q |
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|||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9214458 |
acctgcttgtcccaatcagttttagtagtgatgatgataagcattatggtttgaacaaatgttccaaacaacattccaatccaaatacccta |
9214549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 9234249 - 9234346
Alignment:
| Q |
242 |
acctgcttgtcccagtcagtcttaaatgtgattgtgataagcattatggtttgaacaaatgttccaaacaacattccaatccaaacaccctacaaaag |
339 |
Q |
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|||||||||| ||| ||||| |||| ||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
9234249 |
acctgcttgttccaatcagttttaagagtgatgataataagcactatggtttgaacaaatgttccaaacaacatcccaatccaaataccctacaaaag |
9234346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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