View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10362_high_12 (Length: 302)
Name: NF10362_high_12
Description: NF10362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10362_high_12 |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 35412335 - 35412624
Alignment:
| Q |
1 |
cgtgcaactatcattttctgcattattgttatgtcattttgtgttctttaattggtagtacttgtatactggtctgcatttatgcagagtgcaatgaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35412335 |
cgtgcaactatcattttctgcattattgttatgtcattttgtgttctttaattggtagtacttgtatactggtctgcatttatgcagagtgcaatgaata |
35412434 |
T |
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| Q |
101 |
ctgaccagacttagtaggaggacggccagtaagacagcgtgtgggatgaggattgtcttgaccacctagagttggccttgcataatcatttcctttgtct |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35412435 |
ctgaccagacttagtaggaggacggccagtatgacagcgtgtgggatgaggattgtcttgaccaccaagagttggccttgcataatcatttcctttgtct |
35412534 |
T |
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| Q |
201 |
ggatcacctaaatcattgtacacatcgtaatcataaatcctgtcacatgatgatttcatgcgtcctttcccactaccatcatcacctctc |
290 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35412535 |
ggatcacctaaatcattgtacacatcgtactcataaatcctgtcccatgatgatttcatgcgtcctttcccactaccataatcacctctc |
35412624 |
T |
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Target: scaffold0029 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 53357 - 53310
Alignment:
| Q |
51 |
attggtagtacttgtatactggtctgcatttatgcagagtgcaatgaa |
98 |
Q |
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| T |
53357 |
attggtagtacttgtatactggtctgcatttatgtagtgtgcaatgaa |
53310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 6371289 - 6371337
Alignment:
| Q |
193 |
ctttgtctggatcacctaaatcattgtacacatcgtaatcataaatcct |
241 |
Q |
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|||||||||| ||||| ||||||||||| |||||||| ||||| ||||| |
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| T |
6371289 |
ctttgtctggttcacccaaatcattgtagacatcgtagtcatagatcct |
6371337 |
T |
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