View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10362_high_3 (Length: 441)
Name: NF10362_high_3
Description: NF10362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10362_high_3 |
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| [»] chr1 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 191 - 441
Target Start/End: Complemental strand, 14770051 - 14769805
Alignment:
| Q |
191 |
cattaattattgcagcagcactatgtgggttatcccacccaatgcacatggcgcattatatatacacttgcatataccataccttctataataaccacta |
290 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14770051 |
cattaattattgcaggagcactatgtgggttatccca----atgcacatggcgcattatatatacacttgcatataccataccttctatgataaccacta |
14769956 |
T |
|
| Q |
291 |
tcaaatttagtaccctttcttcaattatacctttcctcattatggcccaatctctcttattcacagtgaagagaagtgcccctgaatttgtaagaccatc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14769955 |
tcaaatttagtaccctttcttcaattatacctttcctcattatggcccaatctctcttattcacagtgaagagaagtgcccctgaatttgtaagaccatc |
14769856 |
T |
|
| Q |
391 |
aaaaccaacacctcatgaaataaaattactttcagatatagatgaccaaga |
441 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14769855 |
aaaaccaacacctcatgaaataaaattactttcagacatagatgaccaaga |
14769805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 329 - 441
Target Start/End: Complemental strand, 14875123 - 14875011
Alignment:
| Q |
329 |
attatggcccaatctctcttattcacagtgaagagaagtgcccctgaatttgtaagaccatcaaaaccaacacctcatgaaataaaattactttcagata |
428 |
Q |
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||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14875123 |
attatggcccaatctctggtattcaaagtgaagaggtgtgcccctgaatttgtaagaccctcaaaaccaacacctcatgaaataaaattactttcagata |
14875024 |
T |
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| Q |
429 |
tagatgaccaaga |
441 |
Q |
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||||||||||||| |
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| T |
14875023 |
tagatgaccaaga |
14875011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 329 - 441
Target Start/End: Complemental strand, 14789966 - 14789854
Alignment:
| Q |
329 |
attatggcccaatctctcttattcacagtgaagagaagtgcccctgaatttgtaagaccatcaaaaccaacacctcatgaaataaaattactttcagata |
428 |
Q |
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|||||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14789966 |
attatggctcaatctctagtattcaaagtgaagaggtgtgccactgaatttgtaagaccatcaaaaccaacacctcatgaaataaaattactttcagata |
14789867 |
T |
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| Q |
429 |
tagatgaccaaga |
441 |
Q |
| |
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||||||||||||| |
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| T |
14789866 |
tagatgaccaaga |
14789854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 441
Target Start/End: Complemental strand, 14880409 - 14880297
Alignment:
| Q |
329 |
attatggcccaatctctcttattcacagtgaagagaagtgcccctgaatttgtaagaccatcaaaaccaacacctcatgaaataaaattactttcagata |
428 |
Q |
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|
||||||||| ||||||| |||||| ||||||||| ||| ||||||||| ||| |||||||||||| |||| |||||||| ||| |||| ||||| | |
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| T |
14880409 |
attatggccaaatctctagtattcaaagtgaagaggcgtgaccctgaattgataacaccatcaaaacccacacttcatgaaacaaagctactctcagaca |
14880310 |
T |
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| Q |
429 |
tagatgaccaaga |
441 |
Q |
| |
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| ||||||||||| |
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| T |
14880309 |
ttgatgaccaaga |
14880297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 14757011 - 14757066
Alignment:
| Q |
386 |
ccatcaaaaccaacacctcatgaaataaaattactttcagatatagatgaccaaga |
441 |
Q |
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||||||||||| ||||||||||||| |||| |||| ||||| || ||||||||||| |
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| T |
14757011 |
ccatcaaaacccacacctcatgaaacaaaactactctcagacattgatgaccaaga |
14757066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 230 - 441
Target Start/End: Original strand, 14857212 - 14857420
Alignment:
| Q |
230 |
caatgcacatggcgcattatatatacacttgcatataccataccttctataataaccactatcaaatttagtaccctttcttcaattatacctttcctca |
329 |
Q |
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||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||| ||| | |
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| T |
14857212 |
caatgcatatggcacattatatatac--ttgcatataccataccttctataataaccagtatcagatttagtaccctttcctcaattatatctt-cctaa |
14857308 |
T |
|
| Q |
330 |
ttatggcccaatctctcttattcacagtgaagagaagtgcccctgaatttgtaagaccatcaaaaccaacacctcatgaaataaaattactttcagatat |
429 |
Q |
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|||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
14857309 |
ctatggcccaacctctgttattcacagtgaagaggtgtgcccctgaatatgtaagaccatcaaaacctgcacctcatgaaataaaattactttcagacat |
14857408 |
T |
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| Q |
430 |
agatgaccaaga |
441 |
Q |
| |
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|||||||||||| |
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| T |
14857409 |
agatgaccaaga |
14857420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 439
Target Start/End: Complemental strand, 92076 - 91969
Alignment:
| Q |
332 |
atggcccaatctctcttattcacagtgaagagaagtgcccctgaatttgtaagaccatcaaaaccaacacctcatgaaataaaattactttcagatatag |
431 |
Q |
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|
|||||||||||||| ||||||| ||| ||||| |||| |||||||| |||| ||||||||||| || ||||||||||||||| ||| ||||| |||| |
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| T |
92076 |
atggcccaatctctgttattcaaagtcaagaggagtgaacctgaattgataagtccatcaaaacccactcctcatgaaataaaacgactctcagacatag |
91977 |
T |
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| Q |
432 |
atgaccaa |
439 |
Q |
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|||||||| |
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| T |
91976 |
atgaccaa |
91969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 34151924 - 34151880
Alignment:
| Q |
249 |
tatatacacttgcatataccataccttctataataaccactatca |
293 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
34151924 |
tatatatacttgcatataccataccttctataataaccagtatca |
34151880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 34175200 - 34175244
Alignment:
| Q |
249 |
tatatacacttgcatataccataccttctataataaccactatca |
293 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34175200 |
tatatatacttgcatataccataccttctataataaccagtatca |
34175244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 15162516 - 15162560
Alignment:
| Q |
249 |
tatatacacttgcatataccataccttctataataaccactatca |
293 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
15162516 |
tatatatacttgcatataccataccttctataataaccagtatca |
15162560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 441
Target Start/End: Original strand, 35368636 - 35368748
Alignment:
| Q |
329 |
attatggcccaatctctcttattcacagtgaagagaagtgcccctgaatttgtaagaccatcaaaaccaacacctcatgaaataaaattactttcagata |
428 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||| |||||||| ||| |||||||| | ||||||||||||||||||| ||| ||| | | |
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| T |
35368636 |
attatggcccaatctctaatattcacggtgaagaggcgtgaacctgaattaataactccatcaaattccacacctcatgaaataaaatcactctcaaaca |
35368735 |
T |
|
| Q |
429 |
tagatgaccaaga |
441 |
Q |
| |
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| ||||| ||||| |
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| T |
35368736 |
ttgatgatcaaga |
35368748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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