View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10362_high_4 (Length: 434)
Name: NF10362_high_4
Description: NF10362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10362_high_4 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 33995062 - 33994630
Alignment:
| Q |
8 |
taatgtagcgaagtaaggagtatactagtattactaatatttcactcttca------tgcaaagtaacnnnnnnnncttgtaaatgataaatgaattacc |
101 |
Q |
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| T |
33995062 |
taatgtagcgaaataaggagtatactagtattactaatatttcactcttcacatttgtgcaaagtaacttttttttcttgtaaatgataaatgaattacc |
33994963 |
T |
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| Q |
102 |
ttaacctgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatatgctacaacactttgccacc |
201 |
Q |
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| T |
33994962 |
ttaacttgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatatgctacaacactttgccacc |
33994863 |
T |
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| Q |
202 |
cagctccaacagaaacacctattcacaacaacatttttagatgaatttggattctctgctgtaacagcgagacggaatatttggaccgtcggatctcaaa |
301 |
Q |
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| T |
33994862 |
cagctccaacagaaacacctattcacaacaacatttttagatgaatttggattctctgctgtaacagcgagacggaatatttggaccgtcggatctcaaa |
33994763 |
T |
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| Q |
302 |
tcaatgatcatgataacataattaacagcagagaatattagataaggttcacttgccacctataatcttaaggactaaaagtttaagaaatgtaacaaaa |
401 |
Q |
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| T |
33994762 |
tcaatgatcatgataacataattaacagcagagaatattagataaggttcacttgccacctataatcttaaggactaaaagtttaagaaatgtaacaaaa |
33994663 |
T |
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| Q |
402 |
taaattgaaacaataagcaatagtaaataatag |
434 |
Q |
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| T |
33994662 |
taaattgaaacaataagcaatagtaaataatag |
33994630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 33986552 - 33986409
Alignment:
| Q |
80 |
tgtaaatgataaatgaattaccttaacctgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttaca |
179 |
Q |
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| T |
33986552 |
tgtaaatgtgaaattaattaccttaacttgtaaatggagaagattaccaagcaaaactccaataggaatcccaattaggtaataggagcctatgtttaca |
33986453 |
T |
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| Q |
180 |
tatgctacaacactttgccacccagctccaacagaaacacctat |
223 |
Q |
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| T |
33986452 |
tatgctgcaacgctttgccagccagctccaacagcaactcctat |
33986409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 34017346 - 34017274
Alignment:
| Q |
138 |
ccaataggaataccaatcaggtaatagcagcctatgtttacatatgctacaacactttgccacccagctccaa |
210 |
Q |
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| T |
34017346 |
ccaacaggaatacctatgatgtaataacaacctaggttcacatatgctacaatactttgccaccctgctccaa |
34017274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 34006852 - 34006763
Alignment:
| Q |
98 |
taccttaacctgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatatgctac |
187 |
Q |
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| T |
34006852 |
taccttgacttgccaatggataatattaccaagaacaatcccaacaggaatacctatgatgtaataacaacctatgttcacatatgctac |
34006763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 9234463 - 9234562
Alignment:
| Q |
125 |
accaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatatgctacaacactttgccacccagctccaacagaaacacctatt |
224 |
Q |
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| T |
9234463 |
accaatcactactccaacaggaataccaattaggtaataacaacctatgtttacatatgctacaatcctttgccacccagctccaacagaaactcctatt |
9234562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 9214697 - 9214796
Alignment:
| Q |
125 |
accaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatatgctacaacactttgccacccagctccaacagaaacacctatt |
224 |
Q |
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| T |
9214697 |
accaatcactactccaacaggaataccaattaggtaataacaacctatgtttacatatgctacaatgctttgccatccagctccaacagaaactcctatt |
9214796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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