View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10362_high_8 (Length: 338)

Name: NF10362_high_8
Description: NF10362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10362_high_8
NF10362_high_8
[»] chr4 (8 HSPs)
chr4 (108-335)||(4337086-4337313)
chr4 (108-335)||(4319177-4319413)
chr4 (121-327)||(4122538-4122747)
chr4 (222-335)||(4132616-4132726)
chr4 (115-172)||(4132515-4132572)
chr4 (222-329)||(4346553-4346660)
chr4 (222-329)||(4362742-4362849)
chr4 (1-54)||(4337367-4337420)
[»] chr6 (7 HSPs)
chr6 (222-329)||(5065447-5065554)
chr6 (227-307)||(5253745-5253825)
chr6 (222-328)||(5177930-5178036)
chr6 (222-328)||(5279755-5279861)
chr6 (222-327)||(5126627-5126732)
chr6 (222-328)||(5346220-5346326)
chr6 (222-328)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (222-329)||(36212919-36213026)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 108 - 335
Target Start/End: Complemental strand, 4337313 - 4337086
Alignment:
Q  108 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtacatgacatt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4337313 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 4337214  T
Q  208 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337213 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 4337114  T
Q  308 catatttgataccactctctgctactcc 335  Q
    |||||||||||||||||||||| |||||    
T  4337113 catatttgataccactctctgccactcc 4337086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 108 - 335
Target Start/End: Original strand, 4319177 - 4319413
Alignment:
Q  108 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtacatgacatt 207  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||||||||| ||||||  | ||||| |||||||||| |||||||  ||||||||    
T  4319177 aaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaagaacattcttatctggtgtatgacatt 4319276  T
Q  208 gctcaaatttttcg---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatc 298  Q
    |||| ||| |||||         |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||| || || ||    
T  4319277 gctccaatatttcgacgactggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtc 4319376  T
Q  299 accaggttccatatttgataccactctctgctactcc 335  Q
    ||||||||||||||||| ||| ||||||||| |||||    
T  4319377 accaggttccatatttgttacaactctctgccactcc 4319413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 121 - 327
Target Start/End: Original strand, 4122538 - 4122747
Alignment:
Q  121 gctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtacatgacattgctcaaatttttc 220  Q
    |||||||||| ||||||| |||||||||||| |||||||||| | ||||||   ||||   |||||||| || |||| |||| |||||||| | ||||||    
T  4122538 gctctacttgcagagagaccctcttggcagcgcattcattttcagcaccac---caac---aacattcttatttggtgcatggcattgctctattttttc 4122631  T
Q  221 g---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccata 311  Q
              |||| ||||||||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  4122632 accgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccata 4122731  T
Q  312 tttgataccactctct 327  Q
    ||||||||||||||||    
T  4122732 tttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 4132616 - 4132726
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||||   |||||||||||||| ||||||||||||||||||||||| |    
T  4132616 tcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaaca---acaatctcgactttgtcaccaggttccatatttgatacta 4132712  T
Q  322 ctctctgctactcc 335  Q
    |||||||| |||||    
T  4132713 ctctctgccactcc 4132726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 4132515 - 4132572
Alignment:
Q  115 ctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccact 172  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  4132515 ctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccact 4132572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 4346660 - 4346553
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | | ||||||||| ||||| ||||| ||||||||||||||||| |||| ||    
T  4346660 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataacaacaactatctccactttgtcaccaggttccatattcgatatca 4346561  T
Q  322 ctctctgc 329  Q
     |||||||    
T  4346560 ttctctgc 4346553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 4362849 - 4362742
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | |  |||| ||| ||||| ||||| |||||||||||||||||||||| ||    
T  4362849 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccattacaataactatctccactttgtcaccaggttccatatttgatatca 4362750  T
Q  322 ctctctgc 329  Q
    ||||||||    
T  4362749 ctctctgc 4362742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4337420 - 4337367
Alignment:
Q  1 atatggagttttcaagagnnnnnnntcagctcaaattaaaatttacctggcaag 54  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||    
T  4337420 atatggagttttcaagagaaaaaaatcagctcaaattaaaatttacctggcaag 4337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 329
Target Start/End: Original strand, 5065447 - 5065554
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||||||||||||| ||||||   ||| |||| |||||||||||||||  || |||||||  |||||||| ||| ||||||| |    
T  5065447 tcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatacta 5065546  T
Q  322 ctctctgc 329  Q
    ||||||||    
T  5065547 ctctctgc 5065554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 5253825 - 5253745
Alignment:
Q  227 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 307  Q
    |||||||||||||||||| |||||| |||||||  |||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  5253825 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttc 5253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 5178036 - 5177930
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5178036 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5177937  T
Q  322 ctctctg 328  Q
    |||||||    
T  5177936 ctctctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 5279861 - 5279755
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5279861 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5279762  T
Q  322 ctctctg 328  Q
    |||||||    
T  5279761 ctctctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 5126627 - 5126732
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||| | |||| || |||||||  ||| ||||  |||||||||||||||||| ||||| | ||||| ||| ||| ||||||| |    
T  5126627 tcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatacta 5126726  T
Q  322 ctctct 327  Q
    ||||||    
T  5126727 ctctct 5126732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 5346326 - 5346220
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| |||||||||||||| || |||| || |||||||  |||  ||| ||| |||||| |||| ||| ||||| | ||||||||| ||| ||||||| |    
T  5346326 tcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaa 5346227  T
Q  322 ctctctg 328  Q
    |||||||    
T  5346226 ctctctg 5346220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 5688901 - 5689007
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||  ||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5688901 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 5689000  T
Q  322 ctctctg 328  Q
    |||||||    
T  5689001 ctctctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 329
Target Start/End: Original strand, 36212919 - 36213026
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||| ||||||||||  | |||| || |||||||  || ||||| ||||||||||||||| ||| | ||||||||||||||| ||| ||||||| |    
T  36212919 tcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T
Q  322 ctctctgc 329  Q
     |||||||    
T  36213019 atctctgc 36213026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University