View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10362_high_9 (Length: 334)
Name: NF10362_high_9
Description: NF10362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10362_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 33381707 - 33381942
Alignment:
| Q |
1 |
acatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaacacggaagttttcaa |
100 |
Q |
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| T |
33381707 |
acatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaaaacggaagttttcaa |
33381806 |
T |
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| Q |
101 |
cttgcaagaaaaataaaactattgattttgaaagaagagatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttgaatattat |
200 |
Q |
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| T |
33381807 |
cttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttgaatattat |
33381906 |
T |
|
| Q |
201 |
tgtacatatgttgagtgacaaagattcaggccaatg |
236 |
Q |
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| T |
33381907 |
tgtacatatgttgagtgacaaagattcaggccaatg |
33381942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 24630485 - 24630323
Alignment:
| Q |
74 |
gagatcagccaacacggaagttttcaacttgcaagaaaaataaaactattgattttgaaagaagagatcaacaccataaattgttggaggaaaacaataa |
173 |
Q |
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| T |
24630485 |
gagatcagcaaacatggaagtcttcaacctgcaagaaaaataaaagtattgattttgtaagaagaaatcaacaccataaattgttggaggaaaacaataa |
24630386 |
T |
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| Q |
174 |
taatgctcaaactgttttgaatattattgtacatatgttgagtgacaaagattcaggccaatg |
236 |
Q |
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| T |
24630385 |
taatgctcaaacagttttgaatattattgtacatatgttgagtgacaaagagttaggccaatg |
24630323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 33381965 - 33382011
Alignment:
| Q |
259 |
aataatttcataagtgcattaaatttgtatagtttacaagaagcaat |
305 |
Q |
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| T |
33381965 |
aataatttcataagtgcattaaatttatatagtttacaagaagcaat |
33382011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33061803 - 33061858
Alignment:
| Q |
1 |
acatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtga |
56 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
33061803 |
acatacaatacgaatggctatcctttatattttaaagcatccctctccttttgtga |
33061858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 33404385 - 33404443
Alignment:
| Q |
2 |
catacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaa |
60 |
Q |
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||||||| | ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
33404385 |
catacaacaagaatggctatcctttatattttaaagcatatctctccatttgtgattaa |
33404443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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