View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10363_high_10 (Length: 329)
Name: NF10363_high_10
Description: NF10363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10363_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 70 - 313
Target Start/End: Complemental strand, 33381942 - 33381699
Alignment:
| Q |
70 |
cattggcctgaatctttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcccccaacaatttatggtgttgatttc |
169 |
Q |
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| T |
33381942 |
cattggcctgaatctttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcctccaacaatttatggtgttgatttc |
33381843 |
T |
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| Q |
170 |
ttctttcaaaatcaatagttttatttttcttgcaagttgaaaacttccgtgttggctgatctcataagtaatctccttaatcacaaagggagagagatgc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381842 |
ttctttcaaaatcaatagttttatttttcttgcaagttgaaaacttccgttttggctgatctcataagtaatctccttaatcacaaagggagagagatgc |
33381743 |
T |
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| Q |
270 |
tttaaaatataaaggatagtcattcatattgtatgttgatgatg |
313 |
Q |
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| T |
33381742 |
tttaaaatataaaggatagtcattcatattgtatgttgatgatg |
33381699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 24630323 - 24630485
Alignment:
| Q |
70 |
cattggcctgaatctttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcccccaacaatttatggtgttgatttc |
169 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24630323 |
cattggcctaactctttgtcactcaacatatgtacaataatattcaaaactgtttgagcattattattgttttcctccaacaatttatggtgttgatttc |
24630422 |
T |
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| Q |
170 |
ttctttcaaaatcaatagttttatttttcttgcaagttgaaaacttccgtgttggctgatctc |
232 |
Q |
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| T |
24630423 |
ttcttacaaaatcaatacttttatttttcttgcaggttgaagacttccatgtttgctgatctc |
24630485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 33061858 - 33061795
Alignment:
| Q |
250 |
tcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
313 |
Q |
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| T |
33061858 |
tcacaaaaggagagggatgctttaaaatataaaggatagccattcgtattgtatgttgatgatg |
33061795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 33404443 - 33404376
Alignment:
| Q |
246 |
ttaatcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
313 |
Q |
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| T |
33404443 |
ttaatcacaaatggagagatatgctttaaaatataaaggatagccattcttgttgtatgctgatgatg |
33404376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33382011 - 33381965
Alignment:
| Q |
1 |
attgcttcttgtaaactatacaaatttaatgcacttatgaaattatt |
47 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33382011 |
attgcttcttgtaaactatataaatttaatgcacttatgaaattatt |
33381965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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