View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10363_high_12 (Length: 319)
Name: NF10363_high_12
Description: NF10363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10363_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 38812321 - 38812628
Alignment:
| Q |
1 |
cagacagagagggccacgtaaattttttgtcctcatgctgaaagagtcatggaattgaaaaggcaccacacagacataaacaattgtaggcgaaagaaat |
100 |
Q |
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| T |
38812321 |
cagacagagagggccacataaattttttgtcctcatgctgaaagagtcatggaattgaaaaggcaccacacagacataaacaattgtaggcgaaagaaat |
38812420 |
T |
|
| Q |
101 |
caaataagaaaagtaacagttagatgcagaggaaaccaaaaacaccttgtagggacctgatatataaatcttaattttttgaaacaagaacttaagaagc |
200 |
Q |
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| T |
38812421 |
caaataagaaaagtaacagttagatgcagaggaaaccaaaaacaccttgtagggacctgatatataaatcttaattttttgaaacaagaacttaagaagc |
38812520 |
T |
|
| Q |
201 |
cttcaattcttgatccaaaataagcacatttcccatatttattggtcaagatttaggtaaggcatctagatctactatttcctttggtattatttgtgaa |
300 |
Q |
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| T |
38812521 |
cttcaattcttgatccaaaataagcacatttccaatatttattggtcaagatttaggtaaggcatctagatctactatttcctttggtattatttgtgaa |
38812620 |
T |
|
| Q |
301 |
catcgcat |
308 |
Q |
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|||||||| |
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| T |
38812621 |
catcgcat |
38812628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 38819262 - 38819346
Alignment:
| Q |
125 |
tgcagaggaaaccaaa-aacaccttgtagggacctgatatataaatcttaattttttgaaacaagaacttaagaagccttcaattc |
209 |
Q |
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|||||||||||||||| |||||||| |||| | ||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||| |
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| T |
38819262 |
tgcagaggaaaccaaacaacaccttataggcatctgatatgtaac-cttaattttttgaaacaagaactaaagaatcctccaattc |
38819346 |
T |
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