View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10363_high_14 (Length: 314)
Name: NF10363_high_14
Description: NF10363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10363_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 16202294 - 16202597
Alignment:
| Q |
1 |
atttttagctgtggcggctttgtcagctattgtagatgtgtaactgctttggttcgatggagtttcaccagttgttgtttcgccttcttgaccgtatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16202294 |
atttttagctgtggcggctttgtcagctattgtagatgtgtaactgctttggttcgatggagtttcaccagttgttgtttcgccttcttcaccgtatcca |
16202393 |
T |
|
| Q |
101 |
agcttcgatgccacggcgtttttagccaaggcagctttgtcaatgacagcagctgtcacagaggggtaactggtctggtttgattgcctttcactaggtg |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16202394 |
agcttcgatgccacagcgtttttagccaaggcagctttgtcaatgacagcagctgtcacagaggggtaactggtctggtttgattgcctttcaccaggtg |
16202493 |
T |
|
| Q |
201 |
ttgtttcatttgtttcaccgtatccaagctttgaagcaacggcatttttagcaccagcagctttatcggtgactgcagaagctgcattatagattttgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16202494 |
ttgtttcatttgtttcaccgtatccaagctttgaagcaacggcatttttagcaccagcagctttgtcggtgactgcagaagctgcattatagattttgtc |
16202593 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
16202594 |
tgtg |
16202597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 37 - 304
Target Start/End: Original strand, 16202594 - 16202864
Alignment:
| Q |
37 |
tgtgtaactgctttggttcgatggagtttcaccagttgttgtttcgccttcttgaccgtatccaagcttcgatgccacggcgtttttagccaaggcagct |
136 |
Q |
| |
|
|||||| ||||| ||||| | ||||||||||||||||||||||| ||| ||| |||||||||||||||||| | || ||||||||||||||||| ||| |
|
|
| T |
16202594 |
tgtgtagctgctctggttagtaggagtttcaccagttgttgtttcacctccttcaccgtatccaagcttcgacgtgacagcgtttttagccaaggcggct |
16202693 |
T |
|
| Q |
137 |
ttgtcaatgacagcagctgtcacagaggggtaactggtctggtttgattgcctttcactaggtgttgtttcatttgtttca---ccgtatccaagctttg |
233 |
Q |
| |
|
||||| ||||| |||||||| ||||| ||||||||| |||| ||| | ||||||||| || |||||| || ||||||| || ||||||| ||||| |
|
|
| T |
16202694 |
ttgtctatgactgcagctgttacagatgggtaactgacctggcttgttggcctttcaccagttgttgtctcgcctgtttcactgccatatccaatctttg |
16202793 |
T |
|
| Q |
234 |
aagcaacggcatttttagcaccagcagctttatcggtgactgcagaagctgcattatagattttgtctgtg |
304 |
Q |
| |
|
||||||| || ||| ||||| |||| ||||| | ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
16202794 |
aagcaaccgcgtttgtagcatcagcggctttgttagtgactgcagacgctgcagagtagattttgtctgtg |
16202864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 16202177 - 16202281
Alignment:
| Q |
1 |
atttttagctgtggcggctttgtcagctattgtagatgtgtaactgctttggttcgatggagtttcaccagttgttgtttcgccttcttgaccgtatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||| |||||||| |||||||| |||||| ||| |
|
|
| T |
16202177 |
atttttagctgtggcggctttgtcagctattgtagatgtgtaacttctttggttcaatggagtatcgccagctgttgttttgccttcttcaccgtaccca |
16202276 |
T |
|
| Q |
101 |
agctt |
105 |
Q |
| |
|
||||| |
|
|
| T |
16202277 |
agctt |
16202281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 16202919 - 16203002
Alignment:
| Q |
221 |
tatccaagctttgaagcaacggcatttttagcaccagcagctttatcggtgactgcagaagctgcattatagattttgtctgtg |
304 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| |||||| | |||| | |||||||| |||| ||||||||||||||| |
|
|
| T |
16202919 |
tatccaagcttcgaagctaccgcatttttagcaccggcagctgtgtcggcaattgcagaagttgcagagtagattttgtctgtg |
16203002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 16202144 - 16202185
Alignment:
| Q |
211 |
tgtttcaccgtatccaagctttgaagcaacggcatttttagc |
252 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
16202144 |
tgtttcgccatatccaagctttgaagcaaccgcatttttagc |
16202185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University