View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10363_high_6 (Length: 358)

Name: NF10363_high_6
Description: NF10363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10363_high_6
NF10363_high_6
[»] chr7 (7 HSPs)
chr7 (98-352)||(3420187-3420441)
chr7 (104-276)||(38305615-38305787)
chr7 (107-233)||(47326407-47326533)
chr7 (117-231)||(37792731-37792845)
chr7 (151-215)||(38484991-38485055)
chr7 (153-226)||(1320129-1320202)
chr7 (284-316)||(12480251-12480283)
[»] chr8 (4 HSPs)
chr8 (106-276)||(34866593-34866763)
chr8 (102-282)||(34389545-34389725)
chr8 (133-231)||(10551728-10551826)
chr8 (145-215)||(9519057-9519127)
[»] chr4 (3 HSPs)
chr4 (104-282)||(30963812-30963990)
chr4 (145-233)||(31051226-31051314)
chr4 (102-282)||(35799967-35800147)
[»] chr1 (6 HSPs)
chr1 (102-282)||(41919831-41920011)
chr1 (107-274)||(24685046-24685213)
chr1 (113-207)||(4651228-4651322)
chr1 (153-226)||(19597943-19598016)
chr1 (283-323)||(13512962-13513002)
chr1 (145-193)||(31586276-31586324)
[»] chr6 (2 HSPs)
chr6 (110-276)||(16510828-16510994)
chr6 (107-232)||(12793536-12793661)
[»] chr3 (6 HSPs)
chr3 (107-274)||(19175860-19176027)
chr3 (107-228)||(17501770-17501891)
chr3 (107-233)||(20611203-20611329)
chr3 (107-230)||(1653453-1653576)
chr3 (113-181)||(25595151-25595219)
chr3 (114-181)||(30935940-30936004)
[»] chr2 (6 HSPs)
chr2 (113-230)||(31902927-31903044)
chr2 (107-282)||(39339368-39339542)
chr2 (151-196)||(25505564-25505609)
chr2 (113-220)||(22886030-22886137)
chr2 (113-180)||(27739200-27739268)
chr2 (151-215)||(29486399-29486463)
[»] chr5 (5 HSPs)
chr5 (153-231)||(22687217-22687295)
chr5 (151-196)||(8730298-8730343)
chr5 (153-231)||(27712400-27712478)
chr5 (118-175)||(23425710-23425767)
chr5 (153-222)||(39184829-39184898)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 98 - 352
Target Start/End: Original strand, 3420187 - 3420441
Alignment:
Q  98 acgtcgccaaaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagtt 197  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||    
T  3420187 acgtcgccaaaacatcctcaccaagaaacaagcaacaacacatgcataaatttagaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggtt 3420286  T
Q  198 cgaagcggaaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaagacaaccaccggtgacaaggaaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||    
T  3420287 cgaagcggaaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgttcgtcgccgtagtaaaagacagccgccggtgacaaggaaa 3420386  T
Q  298 aggcaccaccaccaccacatcaccgcgcatgaccaccactacgcatctctgctac 352  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  3420387 aggcaccaccaccaccacatcactgcgcatgaccaccactacgcatctctactac 3420441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 104 - 276
Target Start/End: Complemental strand, 38305787 - 38305615
Alignment:
Q  104 ccaaaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagc 203  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| | |||||||||||||  ||| | ||||| ||| |||||    
T  38305787 ccaaaacatcctcaccaagaaacaagcaacaacacaaacatcaatctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagc 38305688  T
Q  204 ggaaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaaga 276  Q
    |||||||||||| | |||||  |||||||| |  |||| |||  ||||||||||| |||||||||||||||||    
T  38305687 ggaaccacaacccatatcatttaaaggcggccgactgtgacaacgagaatgcgttcgtcgccgtagtaaaaga 38305615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 47326407 - 47326533
Alignment:
Q  107 aaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgga 206  Q
    |||||||||||||||||||||| || ||||||| | ||  ||||||||||||| |||| | |||||||||||||| ||| |||| ||  || |||| | |    
T  47326407 aaacatcctcaccaagaaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccgatttgaagtgaa 47326506  T
Q  207 accacaacctagatcataaaaaggcgg 233  Q
    | ||||||| | |||||| ||||||||    
T  47326507 aacacaaccgaaatcatagaaaggcgg 47326533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 37792845 - 37792731
Alignment:
Q  117 accaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacct 216  Q
    |||||||||||  || ||||||| |||   ||| |||| |||| |||||| |||| |||||||||  |||||||||| ||| ||||||||| |||||||     
T  37792845 accaagaaacagacagcaacacaaacacggatcaagagaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaaccc 37792746  T
Q  217 agatcataaaaaggc 231  Q
    | ||| |||||||||    
T  37792745 atatcgtaaaaaggc 37792731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 38485055 - 38484991
Alignment:
Q  151 agaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacc 215  Q
    ||||||||||||||||  ||||||||||| | ||| ||||||| ||| ||||||||| |||||||    
T  38485055 agaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 1320202 - 1320129
Alignment:
Q  153 aggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacctagatcataaa 226  Q
    |||||| ||||||| ||||||||||||||  || ||||||| || ||||| || | ||||||||||||| ||||    
T  1320202 aggaagccgaaacccaacaacaaaacacggacatcgacgccggtccgaagtgggaacacaacctagatcgtaaa 1320129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 12480283 - 12480251
Alignment:
Q  284 cggtgacaaggaaaaggcaccaccaccaccaca 316  Q
    |||||||||||||||||||||||||||| ||||    
T  12480283 cggtgacaaggaaaaggcaccaccaccatcaca 12480251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 106 - 276
Target Start/End: Original strand, 34866593 - 34866763
Alignment:
Q  106 aaaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgg 205  Q
    |||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||| ||||||| ||| |||||||    
T  34866593 aaaatatcctcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcgg 34866692  T
Q  206 aaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaaga 276  Q
    |||||||||| || |||||||||||||||| ||||| ||| ||||||||  || |||||||||||||||||    
T  34866693 aaccacaacccaggtcataaaaaggcggtcgcctgtgacaaggagaatgttttcgtcgccgtagtaaaaga 34866763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 282
Target Start/End: Original strand, 34389545 - 34389725
Alignment:
Q  102 cgccaaaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaa 201  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||    ||||||||||||| ||| ||||||| ||| |||    
T  34389545 cgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaa 34389644  T
Q  202 gcggaaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaagacaacca 282  Q
    |||||| ||||||| ||||||| | || ||||   ||||| ||| |||||||| ||| ||||||||||||||||| |||||    
T  34389645 gcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgtcgccgtagtaaaagagaacca 34389725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 10551826 - 10551728
Alignment:
Q  133 caacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacctagatcataaaaaggc 231  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||| |||||||  || ||||||||| ||| |||  ||||||||||||||    
T  10551826 caacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcataaaaaggc 10551728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 9519127 - 9519057
Alignment:
Q  145 aaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacc 215  Q
    |||||||||| ||||||||||| |||||||||||||| ||| ||||||  ||| ||||||| | |||||||    
T  9519127 aaatctagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacc 9519057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 104 - 282
Target Start/End: Complemental strand, 30963990 - 30963812
Alignment:
Q  104 ccaaaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagc 203  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||| |||||||||| ||| ||||||| ||| ||||     
T  30963990 ccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagt 30963891  T
Q  204 ggaaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaagacaacca 282  Q
    |||||||||||| |||||||||||||  |||| ||||| ||| |||||||||||| ||||  ||||||||||| |||||    
T  30963890 ggaaccacaacccagatcataaaaagatggtcgcctgtgacaaggagaatgcgttcgtcgttgtagtaaaagagaacca 30963812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 31051226 - 31051314
Alignment:
Q  145 aaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacctagatcataaaaaggcgg 233  Q
    ||||||| ||||||| | |||| |||||||||||||| ||| ||||||| ||  ||||||||  ||||||| | ||| |||||||||||    
T  31051226 aaatctaaaggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaacccaaatcgtaaaaaggcgg 31051314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 35800147 - 35799967
Alignment:
Q  102 cgccaaaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaa 201  Q
    |||||||||| || ||||||||||||  || ||||||| | | | ||||| || || |||||||| |  | ||||||||| |||||||||||  || |||    
T  35800147 cgccaaaacagccccaccaagaaacaggcagcaacacaaatacatatctaaagaaaaacgaaacctattagcaaaacacgggcaacgacgccgatttgaa 35800048  T
Q  202 gcggaaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaagacaacca 282  Q
     ||||| || |||| | | | |||||||||||||  | |||||| |||||| ||||  ||| ||| |||| |||| |||||    
T  35800047 acggaaacataacccataacgtaaaaaggcggtcgtcggtaacaaggagaaggcgtccgtcaccggagtacaagagaacca 35799967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 41920011 - 41919831
Alignment:
Q  102 cgccaaaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaa 201  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |  ||||||||||||| ||||||||||  ||| |||    
T  41920011 cgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaa 41919912  T
Q  202 gcggaaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaagacaacca 282  Q
    |||||||||||||| ||||||| ||| |||||   ||||| ||| |||||||| ||| || |||||||||||||| |||||    
T  41919911 gcggaaccacaacccagatcattaaatggcggcagcctgtgacaaggagaatgtgttcgttgccgtagtaaaagagaacca 41919831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 24685046 - 24685213
Alignment:
Q  107 aaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgga 206  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||  |||| |||   |||||||||||||| ||| ||||||| ||| ||||| ||    
T  24685046 aaacatcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcagcgacgccggtttgaagcaga 24685145  T
Q  207 accacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaa 274  Q
    ||||||||| | |||||||||||  || | ||||| ||| |||||||| ||| |||||||||||||||    
T  24685146 accacaacccatatcataaaaagctggccgcctgtgacaaggagaatgtgttcgtcgccgtagtaaaa 24685213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 4651322 - 4651228
Alignment:
Q  113 cctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaa 207  Q
    |||||||||||||||  || ||||||| ||||| |||  ||||||||||||||| ||||||||||||| |||| |||| || ||| |||||||||    
T  4651322 cctcaccaagaaacagacagcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaa 4651228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 19598016 - 19597943
Alignment:
Q  153 aggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacctagatcataaa 226  Q
    ||||||| |||||| ||||||| |||||| ||||||||||| ||  |||| |||| ||||||||||||| ||||    
T  19598016 aggaagatgaaacccaacaacagaacacgggcaacgacgccggtctgaagtggaaacacaacctagatcgtaaa 19597943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 13513002 - 13512962
Alignment:
Q  283 ccggtgacaaggaaaaggcaccaccaccaccacatcaccgc 323  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  13513002 ccggtgacaaggaaaaagcaccaccaccacgacatcaccgc 13512962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 31586276 - 31586324
Alignment:
Q  145 aaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgcc 193  Q
    ||||| |||| ||||||||||| |||||||||||||| ||| |||||||    
T  31586276 aaatccagagaaagacgaaacccaacaacaaaacacgggcagcgacgcc 31586324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 110 - 276
Target Start/End: Original strand, 16510828 - 16510994
Alignment:
Q  110 catcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaacc 209  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||| | | |||||||||||||| ||| ||| ||| ||| ||||| |||||    
T  16510828 catcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaacaacaaaacacgggcagcgatgccggtttgaagcagaacc 16510927  T
Q  210 acaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaaga 276  Q
    |||||| | ||||||||||||| ||| | ||| ||| |||||||| |||  || |||||||||||||    
T  16510928 acaacccatatcataaaaaggcagtcgcttgtgacaaggagaatgtgttcatctccgtagtaaaaga 16510994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 12793661 - 12793536
Alignment:
Q  107 aaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgga 206  Q
    ||||| |||||||||||||||  || ||||||| |  || ||| |||||||||||||| | | || ||||||||| ||||||||||||||| |||||| |    
T  12793661 aaacaccctcaccaagaaacagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaa 12793562  T
Q  207 accacaacctagatcataaaaaggcg 232  Q
    | ||||||| | ||| ||||||||||    
T  12793561 aacacaacccatatcgtaaaaaggcg 12793536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 107 - 274
Target Start/End: Complemental strand, 19176027 - 19175860
Alignment:
Q  107 aaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgga 206  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| ||| |||| ||| | |||||||||||||| ||| ||| ||| ||| |||| |||    
T  19176027 aaacatcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagagga 19175928  T
Q  207 accacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaa 274  Q
    ||||||||| | ||||||||||||| | | ||||| ||| ||||||||| || |||||||||||||||    
T  19175927 accacaacccatatcataaaaaggcagccgcctgtgacaaggagaatgcattcgtcgccgtagtaaaa 19175860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 17501770 - 17501891
Alignment:
Q  107 aaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgga 206  Q
    ||||||||||||||| ||| |   | ||||||| | ||| |||||||||||||||||| | ||||||||||||||  ||| |||| ||||| ||||||||    
T  17501770 aaacatcctcaccaaaaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcgga 17501869  T
Q  207 accacaacctagatcataaaaa 228  Q
    | ||||||||||||| ||||||    
T  17501870 aacacaacctagatcgtaaaaa 17501891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 20611329 - 20611203
Alignment:
Q  107 aaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgga 206  Q
    |||||||||||||||||||||  || ||||||| | ||| ||||||| ||||| |||| | |||||||||||||||||| ||||| | ||| |||| | |    
T  20611329 aaacatcctcaccaagaaacaggcatcaacacaaatatagatctagatgaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaa 20611230  T
Q  207 accacaacctagatcataaaaaggcgg 233  Q
    | ||||||| | |||||| ||||||||    
T  20611229 agcacaaccaaaatcatagaaaggcgg 20611203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 1653453 - 1653576
Alignment:
Q  107 aaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgga 206  Q
    |||| ||||||| ||||||||  || ||||||| |||||||| | ||||||||||||| | |||||||||||||| ||| ||||||| ||| |||||| |    
T  1653453 aaacctcctcacgaagaaacaggcagcaacacaaacataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaa 1653552  T
Q  207 accacaacctagatcataaaaagg 230  Q
    |  |||||| ||||| ||| ||||    
T  1653553 aagacaacccagatcgtaacaagg 1653576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 25595151 - 25595219
Alignment:
Q  113 cctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacg 181  Q
    |||||||||||||||| || ||||||| | | |||||||||||| ||||||||  ||||||||||||||    
T  25595151 cctcaccaagaaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaacacg 25595219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 30935940 - 30936004
Alignment:
Q  114 ctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacg 181  Q
    ||||||||||||||  |||||||| | ||||||||||||||   ||||||||| ||||||||||||||    
T  30935940 ctcaccaagaaacagacaacaacaaaaacataaatctagag---gacgaaacccaacaacaaaacacg 30936004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 31902927 - 31903044
Alignment:
Q  113 cctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccaca 212  Q
    ||||| |||||||||| || ||||||  ||||| |||||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||||||| ||||    
T  31902927 cctcagcaagaaacaaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacaca 31903026  T
Q  213 acctagatcataaaaagg 230  Q
    ||||||||||||||||||    
T  31903027 acctagatcataaaaagg 31903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 282
Target Start/End: Original strand, 39339368 - 39339542
Alignment:
Q  107 aaacatcctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcgga 206  Q
    |||||||||||||||||||||  || ||||||| | ||| ||||||||||||| |||| | |||||||||||||||||| ||||| | ||| |||| | |    
T  39339368 aaacatcctcaccaagaaacagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaa 39339467  T
Q  207 accacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgtttgtcgccgtagtaaaagacaacca 282  Q
    | ||||||| | |||||| |||||||| | || || ||| |||| | ||||| |||| || ||||||||| |||||    
T  39339468 aacacaaccaaaatcatagaaaggcggccgccggtgacaaggag-aggcgttcgtcggcggagtaaaagagaacca 39339542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 25505564 - 25505609
Alignment:
Q  151 agaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagt 196  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  25505564 agaggaagacgaagccaaacaacaaaacacgggcagcgacgccagt 25505609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 22886030 - 22886137
Alignment:
Q  113 cctcaccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccaca 212  Q
    |||||||||||||||| || |||||||   | | ||| ||||||||| |||||| ||||||||||||||   | ||||||||||  ||||||||| || |    
T  22886030 cctcaccaagaaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgccagtctgaagcggaaacaaa 22886129  T
Q  213 acctagat 220  Q
    ||| ||||    
T  22886130 acccagat 22886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 27739268 - 27739200
Alignment:
Q  113 cctcaccaagaaacaaccaacaacacata-cataaatctagaggaagacgaaaccaaacaacaaaacac 180  Q
    ||||| |||||||||| || | ||||| | || ||||| ||||||||| ||||||||||||||||||||    
T  27739268 cctcatcaagaaacaagcagccacacaaatcacaaatcaagaggaagatgaaaccaaacaacaaaacac 27739200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 29486463 - 29486399
Alignment:
Q  151 agaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacc 215  Q
    ||||| ||||||||||||||||||||||  | ||| ||||||| ||  ||||||||| |||||||    
T  29486463 agagggagacgaaaccaaacaacaaaacttgggcagcgacgccggtctgaagcggaaacacaacc 29486399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 22687217 - 22687295
Alignment:
Q  153 aggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacctagatcataaaaaggc 231  Q
    ||||||| |||||| |||||||||||||||||| |||| | |||  ||||||||| |||||||| |||| |||| ||||    
T  22687217 aggaagatgaaacctaacaacaaaacacgagcagcgacacaagtctgaagcggaaacacaacctggatcgtaaacaggc 22687295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 8730343 - 8730298
Alignment:
Q  151 agaggaagacgaaaccaaacaacaaaacacgagcaacgacgccagt 196  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  8730343 agaggaagacgaagccaaacaacaaaacacgggcagcgacgccagt 8730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 27712478 - 27712400
Alignment:
Q  153 aggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacctagatcataaaaaggc 231  Q
    ||||||| |||||| |||||||||||||| ||||||||||| ||  ||||  ||| ||||| ||||||| |||| ||||    
T  27712478 aggaagatgaaacccaacaacaaaacacgggcaacgacgccggtctgaagtagaaacacaatctagatcgtaaacaggc 27712400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 23425767 - 23425710
Alignment:
Q  118 ccaagaaacaaccaacaacacatacataaatctagaggaagacgaaaccaaacaacaa 175  Q
    ||||||||||| || ||||||| |||||  ||| |||| |||||||||||||||||||    
T  23425767 ccaagaaacaagcagcaacacaaacataggtcttgagggagacgaaaccaaacaacaa 23425710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 39184829 - 39184898
Alignment:
Q  153 aggaagacgaaaccaaacaacaaaacacgagcaacgacgccagttcgaagcggaaccacaacctagatca 222  Q
    |||||||||||||  ||| ||||||||   ||||||||||||||| ||||| ||| ||||||||| ||||    
T  39184829 aggaagacgaaacacaactacaaaacataggcaacgacgccagtttgaagcagaatcacaacctaaatca 39184898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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