View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10363_high_7 (Length: 351)
Name: NF10363_high_7
Description: NF10363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10363_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 351
Target Start/End: Complemental strand, 244876 - 244531
Alignment:
| Q |
6 |
aggagcagagacaccacgaggaatatagacgtcagcagatatttttgcaatagttttcaatggcctctgttaagatagaaaatattcaaattttgaaaag |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
244876 |
aggaacagacacaccacgaggaatatagacgtcagcagatatttttgcaatagttttcaatggcctctgttaagatagaaaagattcaaattttgaaaag |
244777 |
T |
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| Q |
106 |
ccggcaattgaaatcagatatttataaccaaatattcatagttaaaagaaaaacctgaattccatcaaaaatatttcccagtattccaggtcccaactcc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
244776 |
ccggcaattgaaatcagatatttataaccaaatattgatagttaaaagaaaaacctgaattccatcaaaaatatttcccaatattccaggtcccaactcc |
244677 |
T |
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| Q |
206 |
acggacaaaggctgttaaagttaaaagaaatgaaatagtacttatcaaccaaagtaagcaacagagnnnnnnnnnnnnnnnnnnnnnnnntagatataga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
244676 |
acggacaaaggctgttaaagttaaaagaaatgaaatagtacttatcaaccaaagtacgcaaaagagaaaacaaagaaaaataaaaagaaatagatataga |
244577 |
T |
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| Q |
306 |
atcaaaccttgtgagtacgtaacacaggatcattaaccattaaccc |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244576 |
atcaaaccttgtgagtacgtaacacaggatcattaaccattaaccc |
244531 |
T |
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