View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10363_high_8 (Length: 338)

Name: NF10363_high_8
Description: NF10363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10363_high_8
NF10363_high_8
[»] chr4 (8 HSPs)
chr4 (108-338)||(4337083-4337313)
chr4 (108-338)||(4319177-4319416)
chr4 (121-327)||(4122538-4122747)
chr4 (222-338)||(4132616-4132729)
chr4 (222-329)||(4346553-4346660)
chr4 (222-329)||(4362742-4362849)
chr4 (115-172)||(4132515-4132572)
chr4 (1-54)||(4337367-4337420)
[»] chr6 (7 HSPs)
chr6 (222-338)||(5065447-5065563)
chr6 (227-337)||(5253715-5253825)
chr6 (222-338)||(5126627-5126743)
chr6 (222-328)||(5177930-5178036)
chr6 (222-328)||(5279755-5279861)
chr6 (222-338)||(5346210-5346326)
chr6 (222-328)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (222-338)||(36212919-36213035)
[»] chr3 (2 HSPs)
chr3 (234-338)||(47985403-47985507)
chr3 (234-338)||(48003977-48004081)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 108 - 338
Target Start/End: Complemental strand, 4337313 - 4337083
Alignment:
Q  108 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcgccactctcaacgagaacattctcatctggtgcatgacatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4337313 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 4337214  T
Q  208 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337213 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 4337114  T
Q  308 catatttgataccactctctgctcctcctca 338  Q
    ||||||||||||||||||||||  |||||||    
T  4337113 catatttgataccactctctgccactcctca 4337083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 338
Target Start/End: Original strand, 4319177 - 4319416
Alignment:
Q  108 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcgccactctcaacgagaacattctcatctggtgcatgacatt 207  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||||||||| ||| ||  | ||||| |||||||||| |||||||| ||||||||    
T  4319177 aaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaagaacattcttatctggtgtatgacatt 4319276  T
Q  208 gctcaaatttttcg---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatc 298  Q
    |||| ||| |||||         |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||| || || ||    
T  4319277 gctccaatatttcgacgactggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtc 4319376  T
Q  299 accaggttccatatttgataccactctctgctcctcctca 338  Q
    ||||||||||||||||| ||| |||||||||  |||||||    
T  4319377 accaggttccatatttgttacaactctctgccactcctca 4319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 121 - 327
Target Start/End: Original strand, 4122538 - 4122747
Alignment:
Q  121 gctctacttgaagagagatcctcttggcagcacattcatttttatcgccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttc 220  Q
    |||||||||| ||||||| |||||||||||| |||||||||| | | ||||   ||||   |||||||| || ||||||||| |||||||| | ||||||    
T  4122538 gctctacttgcagagagaccctcttggcagcgcattcattttcagcaccac---caac---aacattcttatttggtgcatggcattgctctattttttc 4122631  T
Q  221 g---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccata 311  Q
              |||| ||||||||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  4122632 accgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccata 4122731  T
Q  312 tttgataccactctct 327  Q
    ||||||||||||||||    
T  4122732 tttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 4132616 - 4132729
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||||   |||||||||||||| ||||||||||||||||||||||| |    
T  4132616 tcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaaca---acaatctcgactttgtcaccaggttccatatttgatacta 4132712  T
Q  322 ctctctgctcctcctca 338  Q
    ||||||||  |||||||    
T  4132713 ctctctgccactcctca 4132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 4346660 - 4346553
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | | ||||||||| ||||| ||||| ||||||||||||||||| |||| ||    
T  4346660 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataacaacaactatctccactttgtcaccaggttccatattcgatatca 4346561  T
Q  322 ctctctgc 329  Q
     |||||||    
T  4346560 ttctctgc 4346553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 4362849 - 4362742
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | |  |||| ||| ||||| ||||| |||||||||||||||||||||| ||    
T  4362849 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccattacaataactatctccactttgtcaccaggttccatatttgatatca 4362750  T
Q  322 ctctctgc 329  Q
    ||||||||    
T  4362749 ctctctgc 4362742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 4132515 - 4132572
Alignment:
Q  115 ctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcgccact 172  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||| ||| |||||    
T  4132515 ctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccact 4132572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4337420 - 4337367
Alignment:
Q  1 atatggagttttcaagagnnnnnnntcagctcaaattaaaatttacctggcaag 54  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||    
T  4337420 atatggagttttcaagagaaaaaaatcagctcaaattaaaatttacctggcaag 4337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 5065447 - 5065563
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||||||||||||| ||||||   ||| |||| |||||||||||||||  || |||||||  |||||||| ||| ||||||| |    
T  5065447 tcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatacta 5065546  T
Q  322 ctctctgctcctcctca 338  Q
    |||||||| ||||||||    
T  5065547 ctctctgcccctcctca 5065563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 337
Target Start/End: Complemental strand, 5253825 - 5253715
Alignment:
Q  227 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctc 326  Q
    |||||||||||||||||| |||||| |||||||  |||||||| ||||||||||||||| ||| |||||||  |||||||| ||| || |||  |||||     
T  5253825 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactctt 5253726  T
Q  327 tgctcctcctc 337  Q
    ||| |||||||    
T  5253725 tgcccctcctc 5253715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 5126627 - 5126743
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||||||||||||| | |||| || |||||||  ||| ||||  |||||||||||||||||| ||||| | ||||| ||| ||| ||||||| |    
T  5126627 tcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatacta 5126726  T
Q  322 ctctctgctcctcctca 338  Q
    |||||| | ||||||||    
T  5126727 ctctctccccctcctca 5126743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 5178036 - 5177930
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5178036 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5177937  T
Q  322 ctctctg 328  Q
    |||||||    
T  5177936 ctctctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 5279861 - 5279755
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5279861 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5279762  T
Q  322 ctctctg 328  Q
    |||||||    
T  5279761 ctctctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 5346326 - 5346210
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| |||||||||||||| || |||| || |||||||  |||  ||| ||| |||||| |||| ||| ||||| | ||||||||| ||| ||||||| |    
T  5346326 tcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaa 5346227  T
Q  322 ctctctgctcctcctca 338  Q
    |||||||  ||||||||    
T  5346226 ctctctggccctcctca 5346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 5688901 - 5689007
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||  ||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5688901 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 5689000  T
Q  322 ctctctg 328  Q
    |||||||    
T  5689001 ctctctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 36212919 - 36213035
Alignment:
Q  222 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 321  Q
    |||| ||| ||||||||||  | |||| || |||||||  || ||||| ||||||||||||||| ||| | ||||||||||||||| ||| ||||||| |    
T  36212919 tcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T
Q  322 ctctctgctcctcctca 338  Q
     ||||||| ||||||||    
T  36213019 atctctgcccctcctca 36213035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 47985403 - 47985507
Alignment:
Q  234 agataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgctcct 333  Q
    |||||||||| | ||||| |||||||  |||  ||| ||||||||||||| | ||| ||||| | ||| ||||| ||| ||||||| ||||||| | |||    
T  47985403 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccct 47985502  T
Q  334 cctca 338  Q
    |||||    
T  47985503 cctca 47985507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 48003977 - 48004081
Alignment:
Q  234 agataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgctcct 333  Q
    |||||||||| | ||||| |||||||  |||  ||| ||||||||||||| | ||| ||||| | ||| ||||| ||| ||||||| ||||||| | |||    
T  48003977 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccct 48004076  T
Q  334 cctca 338  Q
    |||||    
T  48004077 cctca 48004081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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