View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10364_high_1 (Length: 386)
Name: NF10364_high_1
Description: NF10364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10364_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 77 - 371
Target Start/End: Complemental strand, 679538 - 679243
Alignment:
| Q |
77 |
gttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgt |
176 |
Q |
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| T |
679538 |
gttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgt |
679439 |
T |
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| Q |
177 |
tttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaa |
276 |
Q |
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| T |
679438 |
tttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaa |
679339 |
T |
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| Q |
277 |
acttatagtgagtttgaaatatagttatatgcctcattttca-nnnnnnnnnnctttctagttcttagaattagaagaatgctgcgtatatttgag |
371 |
Q |
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| T |
679338 |
acttatagtgagtttgaaatgtagttatatgcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatttgag |
679243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 129 - 371
Target Start/End: Complemental strand, 751290 - 751050
Alignment:
| Q |
129 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
228 |
Q |
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| T |
751290 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
751191 |
T |
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| Q |
229 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn |
328 |
Q |
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| T |
751190 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- |
751092 |
T |
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| Q |
329 |
ctttctagttcttagaattagaagaatgctgcgtatatttgag |
371 |
Q |
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| T |
751091 |
-tttctagttcttagaattagaagaatgctgcgtatatttgag |
751050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 747455 - 747402
Alignment:
| Q |
78 |
ttaatactttgggggatgattattggacaagaatagagggcatcccacattatt |
131 |
Q |
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| T |
747455 |
ttaatactttgggggctgattattggaaaagaatagagggcatcccacattatt |
747402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 291
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
| Q |
131 |
ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta |
226 |
Q |
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|||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||||||| |||| | ||||| |||||||||| |
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| T |
2632504 |
ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- |
2632597 |
T |
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| Q |
227 |
tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt |
291 |
Q |
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| T |
2632598 |
tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt |
2632659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 7324740 - 7324687
Alignment:
| Q |
71 |
gttagggttaatactttgggggatgattattggacaagaatagagggcatccca |
124 |
Q |
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| T |
7324740 |
gttagtgttaatactttggggactgattattggacaagaatagaggacatccca |
7324687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 9594944 - 9594898
Alignment:
| Q |
81 |
atactttgggggatgattattggacaagaatagagggcatcccacat |
127 |
Q |
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| T |
9594944 |
atactttggggactgattattggacaagaatagaggacatcccacat |
9594898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 2644674 - 2644633
Alignment:
| Q |
71 |
gttagggttaatactttgggggatgattattggacaagaata |
112 |
Q |
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| T |
2644674 |
gttagggttaatactttggggactgattattggacaagaata |
2644633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 9566147 - 9566094
Alignment:
| Q |
71 |
gttagggttaatactttgggggatgattattggacaagaatagagggcatccca |
124 |
Q |
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||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
9566147 |
gttagtgtttatactttggggactgattattggacaagaatagaggacatccca |
9566094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 2476373 - 2476426
Alignment:
| Q |
71 |
gttagggttaatactttgggggatgattattggacaagaatagagggcatccca |
124 |
Q |
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||||| ||||||||||||||| |||||||||||||||||| ||| ||||||| |
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| T |
2476373 |
gttagtgttaatactttggggactgattattggacaagaatgcaggacatccca |
2476426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 2265031 - 2264992
Alignment:
| Q |
2 |
gaaatgaacatatatacttaattacacaatcaccttccac |
41 |
Q |
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| T |
2265031 |
gaaatgaacatatatacttaattacacaatcaccttccac |
2264992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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