View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10364_high_2 (Length: 366)
Name: NF10364_high_2
Description: NF10364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10364_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 122 - 338
Target Start/End: Complemental strand, 48081882 - 48081666
Alignment:
| Q |
122 |
tcagtgaacaatgtaatgttagttaatgtttgaaatttagatattgatgtcgaaatcataaataaaatatcagtcataatcaatctaatttcaaatgtat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48081882 |
tcagtgaacaatgtaatgttagttaatgtttgaaatttagatatagatgtcgaaatcataaataaaatatcagtcataatcaatctaatttcaaatgtat |
48081783 |
T |
|
| Q |
222 |
cactatcatggtattaatcaatatcgtcaataattataatgaaatgaactttcattagaaattcaaaaaacattgatacgttgattatgagatattgatt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48081782 |
cactatcatggtattaatcaatatcgtcaataattataatgaaatgaactttcattagaaattcaaaaaacattgatacgttgattatgagatattgatt |
48081683 |
T |
|
| Q |
322 |
gaaacttccaaccatac |
338 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48081682 |
gaaacttccaaccatac |
48081666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 2265031 - 2264992
Alignment:
| Q |
25 |
gaaatgaacatatatacttaattacacaatcaccttccac |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2265031 |
gaaatgaacatatatacttaattacacaatcaccttccac |
2264992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University