View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10364_high_3 (Length: 351)
Name: NF10364_high_3
Description: NF10364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10364_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 7938915 - 7938659
Alignment:
| Q |
1 |
tggtttacataggcatcatgtccaacctacacattcatgagaaagtaaagtgaatcaagtgaaaaggcagtagatacacaatcaactataagaagcatgc |
100 |
Q |
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| T |
7938915 |
tggtttacataggcatcatgtccaacctacacattcatgagaaagtaaagtgaatcaagtgaaaaggcagtagatacacaatcaactataagaagcatgc |
7938816 |
T |
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| Q |
101 |
acaacttcacaagcacattaagcataagttgtccacaaacatagaaacaaatacacatacattatttttcgaacgaagtacgaaatgctgttggagatct |
200 |
Q |
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| T |
7938815 |
acaacttcacaagcacattaagcataagttgtccacaaacatagaaacaaatacacatacattatttttcgaacgaagtatgaaatgttgttgtagatct |
7938716 |
T |
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| Q |
201 |
ttaaaatttctagcaatctctatgcttattatttaaagttttcttctaataattaaa |
257 |
Q |
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| T |
7938715 |
ttaaaatttctagcaatctctatgtttattatttaaagttttcttctaataattaaa |
7938659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 7925801 - 7925680
Alignment:
| Q |
91 |
agaagcatgcacaacttcacaagcacattaagcataagttgtccacaaacatagaaacaaatacacatacattatttttcgaacgaagtacgaaatgctg |
190 |
Q |
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| T |
7925801 |
agaaacatgcacaacttcaaaagcacattaagcataagttctccaaaaacatagaaacaaatacacatacattcttagtcaaatgaaatatgaaacgttg |
7925702 |
T |
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| Q |
191 |
ttggagatctttaaaatttcta |
212 |
Q |
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| T |
7925701 |
ctgtagatctttaaaatttcta |
7925680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 7925922 - 7925847
Alignment:
| Q |
3 |
gtttacataggcatcatgtccaacctacacattcatgagaaagtaaagtgaatcaagtgaaa-aggcagtagatac |
77 |
Q |
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| T |
7925922 |
gtttacgtaggcatcatgtccaacctacacattcatgacaagttaaagtaaatcaaatgaaagaggcagtagatac |
7925847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 7938665 - 7938614
Alignment:
| Q |
292 |
aattaaataacattatataacttctgcacatgcctaattgtatatctctgct |
343 |
Q |
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| T |
7938665 |
aattaaataacattatataacttctgcacaggcctaattgtatatctatgct |
7938614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 13622832 - 13622759
Alignment:
| Q |
5 |
ttacataggcatcatgtccaacctacacattcatgagaaagtaaagtgaatcaagtg-aaaaggcagtagatac |
77 |
Q |
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| T |
13622832 |
ttacataggcaccaggtccaacctacacattcatgacaaagtaaagtgaatcaaatgaaaaaggcagtagatac |
13622759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 13622735 - 13622628
Alignment:
| Q |
134 |
cacaaacatagaaacaaatacacatacattatttttcgaacgaagtacgaaatgctgttggagatctttaaaatttctagcaatct-ctatgcttattat |
232 |
Q |
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||||| |||||||||| ||||||||||||| ||||| |||||| ||||| ||| ||| ||| ||||||||||||||| | ||| ||||||||||||| |
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| T |
13622735 |
cacaagcatagaaaca--tacacatacattacttttc-aacgaaatacgacatgttgt---agacctttaaaatttctagtattctactatgcttattat |
13622642 |
T |
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| Q |
233 |
ttaaagttttcttct |
247 |
Q |
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|| |||||||||||| |
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| T |
13622641 |
tt-aagttttcttct |
13622628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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