View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10364_high_5 (Length: 318)
Name: NF10364_high_5
Description: NF10364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10364_high_5 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0241 (1 HSPs) |
| |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
| [»] scaffold0093 (2 HSPs) |
| |
|
| [»] scaffold0529 (1 HSPs) |
| | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 63 - 318
Target Start/End: Original strand, 27321121 - 27321376
Alignment:
| Q |
63 |
tttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttcattatataatagcactacataac |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27321121 |
tttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttcattatataatagcactacataac |
27321220 |
T |
|
| Q |
163 |
ttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgca |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27321221 |
ttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgca |
27321320 |
T |
|
| Q |
263 |
tcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27321321 |
tcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
27321376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 63 - 318
Target Start/End: Original strand, 34173154 - 34173409
Alignment:
| Q |
63 |
tttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttcattatataatagcactacataac |
162 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34173154 |
tttattaggacaatatgtcattcaaaacatcaaacttaattcatttcatacatcataacaacattacataagttttcattatataatagcactacataac |
34173253 |
T |
|
| Q |
163 |
ttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgca |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34173254 |
ttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgca |
34173353 |
T |
|
| Q |
263 |
tcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34173354 |
tcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
34173409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 63 - 318
Target Start/End: Original strand, 5028879 - 5029134
Alignment:
| Q |
63 |
tttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttcattatataatagcactacataac |
162 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5028879 |
tttattaggacaatatgtcattcaaaacatcaaacttaattcatttcatacatcataacaacattacataagttttcattatataatagcactacataac |
5028978 |
T |
|
| Q |
163 |
ttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgca |
262 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5028979 |
ttatccaagcttaatcaaaatgacaaaaacattaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctccttattcttcaatgca |
5029078 |
T |
|
| Q |
263 |
tcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5029079 |
tcattcttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
5029134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 152 - 318
Target Start/End: Complemental strand, 52277143 - 52276977
Alignment:
| Q |
152 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
251 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||| |||| |
|
|
| T |
52277143 |
cactacataacttatccaaactttatgataattaccaacacacttacaaacaacaacattcctaaaataacaatagttaacacaagcaatttctccttat |
52277044 |
T |
|
| Q |
252 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
52277043 |
tcttcaatgcatcattcttctttaacagtcctctaattactttcttctgcctatcaggaacttctgg |
52276977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 318
Target Start/End: Complemental strand, 18443455 - 18443289
Alignment:
| Q |
152 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
251 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||| |||| |
|
|
| T |
18443455 |
cactacataacttatccaaactttatgataattaccaacacacttacaaacaacaacattcctaaaataacaatagttaacacaagcaatttctccttat |
18443356 |
T |
|
| Q |
252 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
18443355 |
tcttcaatgcatcattcttctttagcagtcctctaattactttcttctgcctatcaggaacttctgg |
18443289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 318
Target Start/End: Complemental strand, 48054013 - 48053852
Alignment:
| Q |
157 |
cataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttc |
256 |
Q |
| |
|
||||| ||| ||||||||||| ||||| || || | ||| | |||||||||||| ||||||| |||||| || ||| | | | || |||| || |||||| |
|
|
| T |
48054013 |
cataagttaaccaagcttaatgaaaatcacaaacaaacttaaaaacaacaacatccctaaaactacaattgttaactccaactttttctccttcttcttc |
48053914 |
T |
|
| Q |
257 |
aatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
| || |||||| ||||| || || |||||||||| |||||||||||| | ||| |||||||| |
|
|
| T |
48053913 |
attgaatcattcttcttcaaaagtcctctaattaatttcttctgcctctcaggcacttctgg |
48053852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 63 - 318
Target Start/End: Original strand, 14876095 - 14876349
Alignment:
| Q |
63 |
tttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttcattatataatagcactacataac |
162 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
14876095 |
tttattatgacaata-gtcattcaaaacatcaaacttaattcatttcatacatcataacaacattacataagttttcaatacataatagcactacataac |
14876193 |
T |
|
| Q |
163 |
ttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgca |
262 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14876194 |
ttatccaagcttaatcaaaatcaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctccttattcttcaatgca |
14876293 |
T |
|
| Q |
263 |
tcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14876294 |
tcattcttctttaacagccctctaattaatttcttctgcctttgaggaacttctgg |
14876349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 19711609 - 19711671
Alignment:
| Q |
240 |
ttctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcc |
302 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| ||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
19711609 |
ttctttctttcttcttcaattcatcattcttccttaacagtgctcaaattattttcttctgcc |
19711671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 63 - 318
Target Start/End: Complemental strand, 8538 - 8280
Alignment:
| Q |
63 |
tttattaggacaatatgtcattcaaaatatcaaacttaa-----tttatttcatacatcataacaacattacataagttttcattatataatagcactac |
157 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8538 |
tttattaggacaaa--gtcattcaaaacatcaaacttaattcatttcatttcatacatcataacaacattacataagttttcattacataatagcactac |
8441 |
T |
|
| Q |
158 |
ataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttca |
257 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
8440 |
ataacttatccaagcttaatcaaaatcaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacaaaagcattctctccttattcttca |
8341 |
T |
|
| Q |
258 |
atgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8340 |
aagcatcattcttctttaacagccctctaattattttcttctgcctttgaggaaattctgg |
8280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 111 - 316
Target Start/End: Complemental strand, 38034 - 37831
Alignment:
| Q |
111 |
tacatcataacaacattacataagttttcattatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
38034 |
tacatcataacaacattacataagttttcattacataatagcactacataacttatccaagcttaatcaaaatcaccaacacactaacaaacaacaacat |
37935 |
T |
|
| Q |
211 |
tcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgagga |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37934 |
tcctaaaattacaatagt--acacaagcattttctccttattcttctattcatcattcttctttaacatgcctctaattattttcttctgcctttgagga |
37837 |
T |
|
| Q |
311 |
acttct |
316 |
Q |
| |
|
|||||| |
|
|
| T |
37836 |
acttct |
37831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 105 - 318
Target Start/End: Original strand, 1688 - 1899
Alignment:
| Q |
105 |
atttcatacatcataacaacattacataagttttcattatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaa |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
1688 |
atttcttacatcataacaacattacataagttttcattacataatagcactacataacttatccaagcttaatcaaagtcaccaacacactaacaaacac |
1787 |
T |
|
| Q |
205 |
caacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctt |
304 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||||||||| || |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1788 |
caacattcctaaaattacaatagt--acacaagcattttatccttattcttctattgatcattcttctttaacaggcctctaattattttcttctgcctt |
1885 |
T |
|
| Q |
305 |
tgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1886 |
tgaggaacttctgg |
1899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 105 - 318
Target Start/End: Original strand, 6311 - 6522
Alignment:
| Q |
105 |
atttcatacatcataacaacattacataagttttcattatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaa |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
6311 |
atttcttacatcataacaacattacataagttttcattacataatagcactacataacttatccaagcttaatcaaagtcaccaacacactaacaaacac |
6410 |
T |
|
| Q |
205 |
caacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctt |
304 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||||||||| || |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6411 |
caacattcctaaaattacaatagt--acacaagcattttatccttattcttctattgatcattcttctttaacaggcctctaattattttcttctgcctt |
6508 |
T |
|
| Q |
305 |
tgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6509 |
tgaggaacttctgg |
6522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0529 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0529
Description:
Target: scaffold0529; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 9740 - 9567
Alignment:
| Q |
63 |
tttattaggacaatatgtcattcaaaatatcaaacttaa-----tttatttcatacatcataacaacattacataagttttcattatataatagcactac |
157 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9740 |
tttattaggacaaa--gtcattcaaaacatcaaacttaattcatttcatttcatacatcataacaacattacataagttttcattacataatagcactac |
9643 |
T |
|
| Q |
158 |
ataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaaca |
233 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9642 |
ataacttatccaagcttaatcaaaatcaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaaca |
9567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 155 - 318
Target Start/End: Original strand, 7987208 - 7987371
Alignment:
| Q |
155 |
tacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattct |
254 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| || | || |||||| |
|
|
| T |
7987208 |
tacataacttatccaagcttaatgaaaatcaccaacacagtaacaaacaacaacattcctaaaattacaatagtcaacacaagccttttttccttattcg |
7987307 |
T |
|
| Q |
255 |
tcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7987308 |
tcaatgcatcattcttcttcaacatgcctctaattattttcttctgcctttgaggaacttctgg |
7987371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 80 - 318
Target Start/End: Complemental strand, 31194971 - 31194717
Alignment:
| Q |
80 |
tcattcaaaatatcaaacttaatttatttcata-----catcataacaacattacataagttttcattatataatagca-----------ctacataact |
163 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
31194971 |
tcattcaaaacatcaaactcaattcatttcatttcttgcatcataacaacattacataagttttcattacataatagcaatgtaacatcactacataact |
31194872 |
T |
|
| Q |
164 |
tatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcat |
263 |
Q |
| |
|
|||||||| ||||| | ||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| |||| || ||||||||||||| |
|
|
| T |
31194871 |
tatccaagtttaatgagaatcaccaacacactcacaaacaacaacattcctaaaattacaatagttaacaatagcattttctccttgttcttcaatgcat |
31194772 |
T |
|
| Q |
264 |
catttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
31194771 |
cattcttctttaacaatcctctaattagtttcttctgcctatcaggaacttctgg |
31194717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 17505707 - 17505591
Alignment:
| Q |
203 |
aacaacattcctaaaattacaatagtaaacacaagcattctct-ctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgc |
301 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||| | | | || ||||||||||||||||| || ||||| || |||||||| | |||||||||| |
|
|
| T |
17505707 |
aacaacatacctaaaattacaattgttaacacaagcatttttttccttgttcttcaatgcatcattcttgtttaatagacctctaatcagtttcttctgc |
17505608 |
T |
|
| Q |
302 |
ctttgaggaacttctgg |
318 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
17505607 |
ctctcaggaacttctgg |
17505591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 318
Target Start/End: Original strand, 38979312 - 38979478
Alignment:
| Q |
152 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
251 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||| |||| |
|
|
| T |
38979312 |
cactacataacttatccaaactttatgataattaccaacacacttacaaacaacaacattcctaaaataacaatagttaacacaagcaatttctccttat |
38979411 |
T |
|
| Q |
252 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||| |||||||||||| | |||||||||||| |
|
|
| T |
38979412 |
tcttcaatgcatcattcttctttaacagtcctttaattactttcttctgcctatcaggaacttctgg |
38979478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 318
Target Start/End: Original strand, 39010409 - 39010575
Alignment:
| Q |
152 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
251 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||| |||| |
|
|
| T |
39010409 |
cactacataacttatccaaactttatgataattaccaacacacttacaaacaacaacattcctaaaataacaatagttaacacaagcaatttctccttat |
39010508 |
T |
|
| Q |
252 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||| |||||||||||| | |||||||||||| |
|
|
| T |
39010509 |
tcttcaatgcatcattcttctttaacagtcctttaattactttcttctgcctatcaggaacttctgg |
39010575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 318
Target Start/End: Original strand, 32973194 - 32973360
Alignment:
| Q |
152 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
251 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| |||||||||||||||||||| | |||||||| |||||||||| | || |||| |
|
|
| T |
32973194 |
cactacataacttatccaaactttatgagaattaccaacacacttacaaacaacaacattcctaacagaacaatagttaacacaagcaatttcaacttat |
32973293 |
T |
|
| Q |
252 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctgg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||| ||| ||||||| | |||||||||||| |
|
|
| T |
32973294 |
tcttcaatgcatcattcttctttaacagtcatctaattagtttaatctgcctatcaggaacttctgg |
32973360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 303
Target Start/End: Complemental strand, 8062685 - 8062549
Alignment:
| Q |
167 |
ccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcatcat |
266 |
Q |
| |
|
||||||||||| ||||| || || | ||| | |||||||||||| ||||||| |||||| |||||| | | | || |||| || ||||||| |||||||| |
|
|
| T |
8062685 |
ccaagcttaatgaaaatcacaaacaaacttaaaaacaacaacatccctaaaactacaattgtaaactccaactttttctccttcttcttcattgcatcat |
8062586 |
T |
|
| Q |
267 |
ttttctttaacagccctctaattattttcttctgcct |
303 |
Q |
| |
|
| ||||| || || |||||||||| |||||||||||| |
|
|
| T |
8062585 |
tcttcttcaaaagtcctctaattaatttcttctgcct |
8062549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 303
Target Start/End: Original strand, 1394083 - 1394219
Alignment:
| Q |
167 |
ccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcatcat |
266 |
Q |
| |
|
||||||||||| ||||| || || | ||| | |||||||||||| ||||||| |||||| |||||| | | | || |||| || ||||||| |||||||| |
|
|
| T |
1394083 |
ccaagcttaatgaaaatcacaaacaaacttaaaaacaacaacatccctaaaactacaattgtaaactccaactttttctccttcttcttcattgcatcat |
1394182 |
T |
|
| Q |
267 |
ttttctttaacagccctctaattattttcttctgcct |
303 |
Q |
| |
|
| ||||| || || |||||||||| ||||||| |||| |
|
|
| T |
1394183 |
tcttcttcaaaagtcctctaattaatttcttccgcct |
1394219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University