View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10364_high_6 (Length: 304)
Name: NF10364_high_6
Description: NF10364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10364_high_6 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 2016691 - 2016399
Alignment:
| Q |
14 |
ttctcaagggacatataatgcttttattggagaacatgagaaaaaagtgacttcattgatccatacattatgttatatatagtgctac--catcaatgat |
111 |
Q |
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| T |
2016691 |
ttctcaagggacatataatgcttttattggagaacatgagaaaaaagtgacttcattgatccatacattatgttatatatagtgctatatcatcaatgat |
2016592 |
T |
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| Q |
112 |
tataaatggtgacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaatagtaatttttaaacatnnnnn |
211 |
Q |
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| T |
2016591 |
tataaatggtgacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaatagtaatttttaaacataaaaa |
2016492 |
T |
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| Q |
212 |
nntaaggggcgtcaaacgggcacctatatgcgtcctatagaaagatagaaacaattagtcttatgatcataagtccgtctctgtacttacata |
304 |
Q |
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| T |
2016491 |
aataaggggcgtcaaatgggcacctatatgcatcctatagaaagatagaaacaattagtcttatgatcataagtccgtctctgtacttacata |
2016399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 6933315 - 6933247
Alignment:
| Q |
122 |
gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat |
190 |
Q |
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| T |
6933315 |
gacacattgagtacatcctatacatgtatcataaatctttactgaatgtgacattgtatctatagtaat |
6933247 |
T |
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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 21547825 - 21547757
Alignment:
| Q |
122 |
gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat |
190 |
Q |
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| T |
21547825 |
gacacattgagtacatcctatacatgtatcataaatctttactgaatgtgacattgtatctatagtaat |
21547757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 26291964 - 26291919
Alignment:
| Q |
145 |
atgtatcataaatctttactgaatgtgacattgtatcaatagtaat |
190 |
Q |
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| T |
26291964 |
atgtatcataaatctttactgaatgtgacattgtatctatagtaat |
26291919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 509376 - 509308
Alignment:
| Q |
122 |
gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat |
190 |
Q |
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| T |
509376 |
gacacattgagtacatcctatacatgtatcataaatctttactgaatgtgacattgtatctatagtaat |
509308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 18088559 - 18088627
Alignment:
| Q |
122 |
gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat |
190 |
Q |
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| T |
18088559 |
gacacattgagtacatcctatacatgtatcataaatctttactgaatgtgacattgtatctatagtaat |
18088627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 9071978 - 9071911
Alignment:
| Q |
123 |
acacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat |
190 |
Q |
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| T |
9071978 |
acacattgaatacatcctatacatatatcaaaaatctttatttaatgtgacattgtatctatagtaat |
9071911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 30234635 - 30234694
Alignment:
| Q |
122 |
gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatc |
181 |
Q |
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| T |
30234635 |
gacacattgagtacatcctatacatgtatcataaatctttattgaatgtgacattatatc |
30234694 |
T |
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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 171053 - 170999
Alignment:
| Q |
123 |
acacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattg |
177 |
Q |
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| T |
171053 |
acacattgagtgcatcctatacatgtatcataaatttttacggaatgtgacattg |
170999 |
T |
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