View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10365_high_12 (Length: 361)
Name: NF10365_high_12
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_12 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 26886690 - 26886341
Alignment:
| Q |
8 |
aagcatagatcgtattcaatatctgctctatctcgacaaagctccctctcggtcaactagaattgaattgatatgtatgataatgtatgtatttgtttct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26886690 |
aagcatagatcgtattcaatatctgctctatctcgacaaagctccctctcggtcaactagaattgaattgatatgtatgataatgtatgtatttgtctct |
26886591 |
T |
|
| Q |
108 |
caattgtatatacttttgatttgagctatatatgtaaagaaaagatataataattcatgttcatgttgttcttgtgctttgtagtcgccacaagccgtgt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26886590 |
caattgtatatacttttgatttgagctatatatgtaaagaaaagaaataataattcatgttcatgttgttcttgtgctttgtagacgccacaagccgtgt |
26886491 |
T |
|
| Q |
208 |
ttaagaaaatcttnnnnnnnnnnnnntccttggttacgagaatgtatacaagaggaattcaatccagaaaattacagtaagattttccnnnnnnnnnnnn |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26886490 |
ttaagaaaatctt-aaagaggaaaaatccttggttacgagaatgtataaaagaggaattcaatccagaaaattacagtaagattttcc---ttttttttt |
26886395 |
T |
|
| Q |
308 |
nnnnaaactattattcttaattaagtacttaatctatgtcacagacaaataatc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26886394 |
ttttaaactattattcttaattaagtacttaatctatgtcacagacaaataatc |
26886341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 26630912 - 26630946
Alignment:
| Q |
261 |
ggaattcaatccagaaaattacagtaagattttcc |
295 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
26630912 |
ggaattcaatccagaatattacagtaagattttcc |
26630946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University