View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10365_high_15 (Length: 357)

Name: NF10365_high_15
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10365_high_15
NF10365_high_15
[»] chr4 (9 HSPs)
chr4 (54-336)||(25201464-25201744)
chr4 (132-334)||(13957478-13957681)
chr4 (57-326)||(51758632-51758901)
chr4 (132-334)||(42511386-42511586)
chr4 (169-334)||(10142410-10142576)
chr4 (252-334)||(14192065-14192147)
chr4 (158-334)||(51337817-51337997)
chr4 (200-334)||(28143196-28143333)
chr4 (55-293)||(20151992-20152231)
[»] chr7 (13 HSPs)
chr7 (54-334)||(39038311-39038589)
chr7 (55-334)||(43178647-43178923)
chr7 (178-334)||(24441706-24441864)
chr7 (200-334)||(6195668-6195805)
chr7 (158-334)||(6189152-6189332)
chr7 (252-334)||(19311691-19311773)
chr7 (158-334)||(48636868-48637048)
chr7 (252-334)||(8069846-8069928)
chr7 (108-317)||(23305442-23305648)
chr7 (258-317)||(8113566-8113625)
chr7 (132-268)||(8113640-8113778)
chr7 (158-334)||(48238625-48238804)
chr7 (169-242)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (55-334)||(11648157-11648435)
chr8 (54-334)||(960728-961008)
chr8 (180-286)||(35824166-35824273)
chr8 (230-334)||(602175-602280)
chr8 (176-334)||(11994463-11994623)
chr8 (132-250)||(9381946-9382062)
chr8 (182-264)||(32073462-32073545)
chr8 (252-334)||(2878957-2879039)
chr8 (75-242)||(24683070-24683231)
chr8 (252-334)||(6927306-6927388)
chr8 (252-334)||(28509524-28509606)
chr8 (252-334)||(28516731-28516813)
[»] chr6 (7 HSPs)
chr6 (54-316)||(1830844-1831104)
chr6 (132-334)||(11680517-11680720)
chr6 (168-328)||(14677914-14678076)
chr6 (252-334)||(33516375-33516457)
chr6 (168-334)||(4064985-4065150)
chr6 (178-293)||(14679000-14679116)
chr6 (273-326)||(1831137-1831190)
[»] chr5 (8 HSPs)
chr5 (54-328)||(5120580-5120856)
chr5 (132-334)||(43171066-43171267)
chr5 (54-214)||(23318168-23318327)
chr5 (168-321)||(26402144-26402295)
chr5 (168-334)||(14651489-14651656)
chr5 (158-334)||(7850480-7850660)
chr5 (252-334)||(38491310-38491392)
chr5 (54-129)||(33922247-33922322)
[»] chr1 (12 HSPs)
chr1 (54-214)||(12783770-12783929)
chr1 (68-285)||(47397224-47397437)
chr1 (180-328)||(12028035-12028183)
chr1 (180-317)||(5208454-5208592)
chr1 (216-334)||(48646236-48646355)
chr1 (158-334)||(36296868-36297048)
chr1 (158-334)||(42722403-42722583)
chr1 (200-334)||(28945560-28945697)
chr1 (252-334)||(26221954-26222036)
chr1 (251-321)||(49228403-49228473)
chr1 (216-321)||(35501355-35501460)
chr1 (203-250)||(12783628-12783675)
[»] chr3 (6 HSPs)
chr3 (132-326)||(47185206-47185401)
chr3 (252-334)||(6024505-6024587)
chr3 (158-334)||(23044645-23044825)
chr3 (200-334)||(31884705-31884842)
chr3 (198-251)||(44879476-44879529)
chr3 (258-334)||(44879802-44879878)
[»] chr2 (17 HSPs)
chr2 (132-334)||(25621679-25621882)
chr2 (132-317)||(14904265-14904451)
chr2 (54-223)||(6883446-6883607)
chr2 (54-162)||(25415782-25415890)
chr2 (132-321)||(38422322-38422512)
chr2 (168-334)||(90080-90248)
chr2 (113-281)||(43672737-43672906)
chr2 (252-334)||(2565866-2565948)
chr2 (252-334)||(18780924-18781006)
chr2 (200-334)||(19678245-19678382)
chr2 (252-334)||(6271355-6271437)
chr2 (158-334)||(29303342-29303522)
chr2 (252-334)||(45277251-45277333)
chr2 (62-154)||(10023326-10023418)
chr2 (252-334)||(7880108-7880190)
chr2 (248-317)||(25415498-25415567)
chr2 (271-334)||(6883603-6883666)
[»] scaffold0385 (1 HSPs)
scaffold0385 (215-331)||(903-1020)
[»] scaffold0178 (1 HSPs)
scaffold0178 (132-221)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (256-334)||(2557-2635)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 54 - 336
Target Start/End: Original strand, 25201464 - 25201744
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    ||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  25201464 ttattgatataagttatcaagtgtgctaaaattcat---agaaagtacacttttaacaacagtctaatattgattttttatcatcataatggacttgtta 25201560  T
Q  154 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 252  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  25201561 gaaatacttatggtatataaagagaggaatgatgtacttcttacatacaaaggagttcttgcatttatgatttctctaaaaagtctaacactaattttgt 25201660  T
Q  253 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 336  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25201661 atcaaatattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 25201744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 132 - 334
Target Start/End: Original strand, 13957478 - 13957681
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    |||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||||| ||||    
T  13957478 tatcatcataatgaacttgttagagatacttatagcatataaaaagaggaatgatgtacttctagtatacaaatgacttcttgtatctatgatttatcta 13957577  T
Q  232 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 330  Q
    |||| |||||| |||| ||||||||| |||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||     
T  13957578 aaaactctaacactaattttgtatcatgtattatcattgttatgagtttaacattgaagaattttgcatccaaaagtttaaaatttagttaattacgtgt 13957677  T
Q  331 tgat 334  Q
    ||||    
T  13957678 tgat 13957681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 51758632 - 51758901
Alignment:
Q  57 ttgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaa 156  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||| |||||| |  |||||| ||||||||| ||||||| |||| ||||||||| |     
T  51758632 ttgatgtaagttattaagtgtgctaaaattcaccattgaaggtacacctttaacta--gtctaacattaattttgtatcatcgtaataaacttgttaaag 51758729  T
Q  157 atacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatc 255  Q
    ||||||||   ||||||| || ||||||||||||||| |||| ||||||||||||||| ||||  |||| |||||||||||||||| |||| ||||||||    
T  51758730 atacttatatcatataaaaagcggaatgatgtacttcaagcaaacaaaggagttcttgtatcttagattactctaaaaagtctaacactaattttgtatc 51758829  T
Q  256 aagtattattgttgttatgag-tttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 326  Q
    | ||||||||||||||||||| ||||||||||  || ||||  ||| ||||||||||| |||||||| ||||    
T  51758830 atgtattattgttgttatgagttttaacattgccgacttttccatccaaaagtttaaattttaattaattac 51758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 334
Target Start/End: Complemental strand, 42511586 - 42511386
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    |||||| ||||||||||||||||| |||||| |   ||||||| ||||||||||||||||||||| ||||||| |||||||||  |||||||||  ||||    
T  42511586 tatcattataatgaacttgttagagatacttctaacatataaaaagaggaatgatgtacttctagtatacaaaagagttcttgtgtctatgattcttcta 42511487  T
Q  232 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 330  Q
    |||||  |||| |||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||| ||| |||||||     
T  42511486 aaaag--taacactaattttgtatcatgtattattgttgttatgagtttaacattggagaa-tttgcatctaagagtttaaaatttagttaattacgtgc 42511390  T
Q  331 tgat 334  Q
    ||||    
T  42511389 tgat 42511386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 169 - 334
Target Start/End: Original strand, 10142410 - 10142576
Alignment:
Q  169 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgt 267  Q
    |||||| |||||||| |||||| ||||| |||||||||||||| || |||||||||| || ||||||||||||| ||||||| |||||| ||||||||||    
T  10142410 tataaaaagaggaatcatgtacatctagtatacaaaggagttcatgtatctatgattcctttaaaaagtctaacactaattttgtatcatgtattattgt 10142509  T
Q  268 tgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||| |||||||||||| ||||||||| ||  |||||||||||||||| ||| ||||||| ||||    
T  10142510 tgttattagtttaacattggagaattttgcattcaaaagtttaaaatttagttaattacgtgttgat 10142576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 14192147 - 14192065
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  14192147 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 14192065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 51337817 - 51337997
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  51337817 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 51337916  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  51337917 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 51337997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 28143333 - 28143196
Alignment:
Q  200 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 296  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28143333 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28143234  T
Q  297 tatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||| ||| || ||||||||||||  ||||||| ||||    
T  28143233 tatccaaatgtctaaaatttaattgattacgtgttgat 28143196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 293
Target Start/End: Complemental strand, 20152231 - 20151992
Alignment:
Q  55 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 154  Q
    ||||||||||||| | |||||||||| |||||| |||| | |   | ||| ||||||||| ||||| | | || || ||| |||| ||| |||||| |||    
T  20152231 tattgatataagtgagtaagtgtgcttaaattcctcattggagacatactattaacaacattctaacactcatattatataatcaaaataaacttgatag 20152132  T
Q  155 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac-tctaatttgta 253  Q
    | |||||| |   ||||||| ||| ||||||| ||||| || | || |||||||||||||||| | | ||| ||||||||||| |||| |    ||||||    
T  20152131 agatacttgtaacatataaaaagatgaatgatatacttgtaacttataaaggagttcttgcattttttattcctctaaaaagtttaacattggttttgta 20152032  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaatt 293  Q
    |||| |||| ||||||||||| |||||| |||| ||||||    
T  20152031 tcaactattgttgttgttatgggtttaatattggagaatt 20151992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 54 - 334
Target Start/End: Complemental strand, 39038589 - 39038311
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| || || ||| ||||| |||||||||||| |||||||||    
T  39038589 ttattgatataaattattaagtgtgctaaaattcatcattgaaggtacacttttaacaacaatccaacattgattttgtatcatcataataaacttgtta 39038490  T
Q  154 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 252  Q
    || ||||||||   ||||||| ||||||||||||||||||||||||||||||||||| ||  || || |||| |||||||||||||||| |||| |||||    
T  39038489 gagatacttataacatataaaaagaggaatgatgtacttctagcatacaaaggagtttttctatatacgattcctctaaaaagtctaacactaattttgt 39038390  T
Q  253 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||| |||||||||||||||||||||||||||||  ||  |||  ||| |||||||||||||||||||| ||||||| ||||    
T  39038389 atcatgtattattgttgttatgagtttaacattg-gga--tttccatccaaaagtttaaaatttaattaattacgtgttgat 39038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 55 - 334
Target Start/End: Complemental strand, 43178923 - 43178647
Alignment:
Q  55 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 154  Q
    |||||||||||||||||||||||| ||||||| | ||| ||| |||||| |||||||| ||||||| ||| ||||| ||||||||||||||| ||| |||    
T  43178923 tattgatataagttattaagtgtgttaaaattaaccattgaaggtacacatttaacaatagtctaacattgattttgtatcatcataatgaatttggtag 43178824  T
Q  155 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 253  Q
    | ||||||||   ||||||| |||| |||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||| |||| ||||||    
T  43178823 agatacttatatcatataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgta 43178724  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    | | ||||||   |||||||||||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||| ||||    
T  43178723 t-atgtatta---ttgttatgagtttaacattggagatttttttatccaaaagtttaaaatttaattaattacgtgttgat 43178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 178 - 334
Target Start/End: Complemental strand, 24441864 - 24441706
Alignment:
Q  178 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgag 276  Q
    ||||||||| ||||||||| |||||||||||||||||  ||||||||| ||||||||||| ||||  ||| ||||||||| |||||||||||||| ||||    
T  24441864 aggaatgatatacttctagtatacaaaggagttcttgtgtctatgattcctctaaaaagtttaacaataattttgtatcatgtattattgttgttttgag 24441765  T
Q  277 ttt-aacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||| ||||||||||||||||| ||| |||||||||||||||| ||| ||||||| ||||    
T  24441764 tttaaacattgaagaattttgcatccaaaagtttaaaatttatttaattacgtgttgat 24441706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 6195805 - 6195668
Alignment:
Q  200 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 296  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  6195805 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 6195706  T
Q  297 tatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||| ||| |||||||||||||||| ||||||| ||||    
T  6195705 tatccaaatgtttaaaatttaattaattacgtgttgat 6195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 334
Target Start/End: Complemental strand, 6189332 - 6189152
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  6189332 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 6189233  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6189232 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtataaaatttaattaattacgtgttgat 6189152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 19311773 - 19311691
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  19311773 tatcaagtattattgttgttatgggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 19311691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 48636868 - 48637048
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48636868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48636967  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  48636968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 48637048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 8069846 - 8069928
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  8069846 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 8069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 317
Target Start/End: Original strand, 23305442 - 23305648
Alignment:
Q  108 aacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagga 207  Q
    ||||||||||||| ||| ||||| || |||| ||||||||||| ||      ||| | | |||| || |||||||| || ||||||||||||||||| ||    
T  23305442 aacaacagtctaacattgattttgtaacatcgtaatgaacttggta------cttgtagcatattaaaagaggaataatctacttctagcatacaaatga 23305535  T
Q  208 gttcttgcatctatgatttctctaaaaagtctaactctaatttg-tatc--aagtattattgttgttatgagtttaacattgaagaattttgtatctaaa 304  Q
    ||||| | ||||  |||| ||| ||||||||||||  | ||||  ||||  |||||||||||| |||||| ||||||||||| | ||||||||||| |||    
T  23305536 gttctcgtatcttagattcctcaaaaaagtctaaccttgattttctatcgcaagtattattgtagttatgggtttaacattggataattttgtatccaaa 23305635  T
Q  305 agtttaaaattta 317  Q
    ||| |||||||||    
T  23305636 agtctaaaattta 23305648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 8113625 - 8113566
Alignment:
Q  258 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 317  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  8113625 gtattattgttgttatgagtttaacattggagaattttgcatccaaaagtttaaaattta 8113566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 132 - 268
Target Start/End: Complemental strand, 8113778 - 8113640
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctct- 230  Q
    |||||||||||||||||||||||| |||  |||   |||||||   | ||||||||||||||||  ||||||||||  ||||| ||| |||||| ||||     
T  8113778 tatcatcataatgaacttgttagagatatctataacatataaaagtaagaatgatgtacttctactatacaaaggaactcttgtatcgatgattcctcta 8113679  T
Q  231 aaaaagtctaactctaa-tttgtatcaagtattattgtt 268  Q
    |||||||||||| |||| ||||||||| |||||||||||    
T  8113678 aaaaagtctaacactaattttgtatcatgtattattgtt 8113640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 48238625 - 48238804
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48238625 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48238724  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||  ||| || ||||||||||||| ||||||| ||||    
T  48238725 tcaagtattattgttgttatgtgtt-aacattggagaattttgtattcaaatgtctaaaatttaattaattacgtgttgat 48238804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 14573995 - 14574068
Alignment:
Q  169 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 242  Q
    |||||| ||| ||||||||||||| || | || |||||||||||||| ||| ||||| |||| |||||||||||    
T  14573995 tataaaaagaagaatgatgtacttgtaacgtataaaggagttcttgcctctttgattcctctgaaaagtctaac 14574068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 55 - 334
Target Start/End: Complemental strand, 11648435 - 11648157
Alignment:
Q  55 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 154  Q
    |||| ||||||||||||||||||||| |||| || ||| |||  ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||||    
T  11648435 tattaatataagttattaagtgtgcttaaatacaccattgaagttacacatttaacaatagtctaacattaattttgtatcattataatgaacttgttag 11648336  T
Q  155 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 253  Q
    | |||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| |||| ||| |||| ||||||    
T  11648335 agatacttatagtttataaaaagaggaatgatgtatttctagcatacaaaggagttattgtatctatgattcctctaaagagtcaaacactaattttgta 11648236  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||  | |||||||||||||||||||||||||| || |||||  ||| |||||||||||||||||||| ||| ||| ||||    
T  11648235 tca--tgttattgttgttatgagtttaacattggagtatttttcatccaaaagtttaaaatttaattaattatgtgttgat 11648157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 54 - 334
Target Start/End: Complemental strand, 961008 - 960728
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    ||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||| || || ||||||||| ||||||||||||||||||||||    
T  961008 ttattgatataagttattaagtgtgctaaaattgaccattgaaggcacacttttaacaacaatccaacattaattttgtatcatcataatgaacttgtta 960909  T
Q  154 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaag-tctaactctaattt-g 251  Q
    |  ||  ||||   ||||||| |||||||||||  |||| ||||||||||| ||||||||| |||||||||| |||||||||  ||||||  |||||| |    
T  960908 gctatgtttataacatataaaaagaggaatgat--acttatagcatacaaatgagttcttgtatctatgattcctctaaaaaaatctaacattaattttg 960811  T
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
     | || ||||| ||||||| ||||||||||||||  ||||||||| ||| ||||||||||| |||||||| ||||||| ||||    
T  960810 caccatgtattcttgttgtgatgagtttaacattagagaattttgcatcaaaaagtttaaattttaattaattacgtgttgat 960728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 35824166 - 35824273
Alignment:
Q  180 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 278  Q
    ||||||||||||||| | |||||||||| |||||  |||||||||| ||||||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  35824166 gaatgatgtacttctggtatacaaaggatttcttttatctatgattcctctaaaaagtttaacactaattttgtatcatgtattattgttgttatgagtt 35824265  T
Q  279 taacattg 286  Q
    ||||||||    
T  35824266 taacattg 35824273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 334
Target Start/End: Complemental strand, 602280 - 602175
Alignment:
Q  230 taaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 328  Q
    ||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||||| ||||||    
T  602280 taaaaagtctaacactaattttgtgtcatgtattattgttgttatgagtttaacattttagaattttccatccaaaagtttaaaatttaattaattacgt 602181  T
Q  329 gatgat 334  Q
    | ||||    
T  602180 gttgat 602175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 334
Target Start/End: Complemental strand, 11994623 - 11994463
Alignment:
Q  176 agaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattattgttgttat 273  Q
    ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||||||||||    
T  11994623 agaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattttaacacatttttttttatcaagtattattgttgttat 11994524  T
Q  274 gagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    | ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  11994523 gggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 11994463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 9382062 - 9381946
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    |||||||||||||||||||||||   ||| | | | ||||||| | | ||||||||||||||||  ||||||| ||||||||| |||||||||| |||||    
T  9382062 tatcatcataatgaacttgttagc--tacctgtagcatataaaaataagaatgatgtacttctaatatacaaaagagttcttgtatctatgattcctcta 9381965  T
Q  232 aaaagtctaactctaattt 250  Q
    ||||||||||| |||||||    
T  9381964 aaaagtctaacactaattt 9381946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 32073462 - 32073545
Alignment:
Q  182 atgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattat 264  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  32073462 atgatgtacttctagcatacaaatgagtttttgtatctatgattcctctaaaaagtctaactctaactttgtatcttgtattat 32073545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 2879039 - 2878957
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2879039 tatcaagtattattgttgttatgagtttaatattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2878957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 24683070 - 24683231
Alignment:
Q  75 tgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaa 174  Q
    |||||||||||||| ||| | | ||||||  ||||||||||||||| ||| ||||| ||| |||||||| |||||| ||       || | | |||||||    
T  24683070 tgtgctaaaattcaccattggaggtacacagttaacaacagtctaacattgattttgtattatcataataaacttggtat------ttgtagcatataaa 24683163  T
Q  175 gagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 242  Q
     ||||||||||| ||||| ||||||||||| ||||||||| ||||  |||| ||||||||||||||||    
T  24683164 aagaggaatgatttacttgtagcatacaaatgagttcttgtatcttagattactctaaaaagtctaac 24683231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 6927388 - 6927306
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6927388 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 28509524 - 28509606
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28509524 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 28516731 - 28516813
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28516731 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28516813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 54 - 316
Target Start/End: Original strand, 1830844 - 1831104
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    |||||||||||||||||||||||| |||||||| | ||| |||||||||| |||||||| ||| ||| ||| ||||| ||||||||||||||||||| ||    
T  1830844 ttattgatataagttattaagtgtcctaaaattaaccattgaaagtacacatttaacaatagtataacattgattttgtatcatcataatgaacttgcta 1830943  T
Q  154 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 252  Q
    |||||||||||   ||||||| ||| |||||||| |||||||||||||||||||| ||||| ||   ||||| |||||||||||||||  |||| |||||    
T  1830944 gaaatacttataacatataaaaagatgaatgatgcacttctagcatacaaaggagctcttgtattattgattactctaaaaagtctaaaactaattttgt 1831043  T
Q  253 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattt 316  Q
    |||| ||||||   ||||||| |||||||||||| ||||||||  ||| |||||||||||||||    
T  1831044 atcatgtatta---ttgttataagtttaacattggagaattttccatccaaaagtttaaaattt 1831104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 132 - 334
Target Start/End: Complemental strand, 11680720 - 11680517
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    |||||||||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||| |||  | ||||||  |   |||| |||| ||| |    
T  11680720 tatcatcataatgaacttgttagagatacttatagcatataaaaagagtaatgatgtacttctagtatattatggagttactctgtctaagattcctcaa 11680621  T
Q  232 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 330  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||| |||||||     
T  11680620 aaaagtctaacaataattttgtatcaagtattattgttgttaggagtttaacattggagaattttgcatctaaaactttaaaatttagttaattacgtgt 11680521  T
Q  331 tgat 334  Q
    ||||    
T  11680520 tgat 11680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 328
Target Start/End: Original strand, 14677914 - 14678076
Alignment:
Q  168 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 265  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| |||||| |  |  ||| ||||||||||||||    
T  14677914 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattctaacacatttttttttatcaagtattatt 14678013  T
Q  266 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 328  Q
    ||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||    
T  14678014 gttgttatgggtttaacattggagaattttgtatccaaatgtctaaaatttaattaattacgt 14678076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 33516457 - 33516375
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  33516457 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 33516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 334
Target Start/End: Complemental strand, 4065150 - 4064985
Alignment:
Q  168 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattg 266  Q
    |||||||  |||||||||||| ||| || |||| ||||||||||||| |||| || || |||||||||||  ||| ||  ||| ||||||||||| ||||    
T  4065150 atataaaatgaggaatgatgttcttgtaacatataaaggagttcttgtatctttggttcctctaaaaagt--aacgctggttttgtatcaagtataattg 4065053  T
Q  267 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||| |||| |||||| |||| |||||| || ||| |||||  ||||||||||||| ||| ||| ||||    
T  4065052 ttgctatgggtttaatattggagaattatgcatccaaaaggctaaaatttaattaattaagtgttgat 4064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 14679116 - 14679000
Alignment:
Q  178 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgag 276  Q
    |||||||||| |||| || |||| ||| ||| | |||||||| |||||  |||||||| | |||| ||| ||| |||||||||||||||||| | ||| |    
T  14679116 aggaatgatgcacttgtaacatataaatgagattttgcatctctgattcttctaaaaaatttaacactagttttgtatcaagtattattgttatcatgcg 14679017  T
Q  277 tttaacattgaagaatt 293  Q
    ||||| |||||||||||    
T  14679016 tttaatattgaagaatt 14679000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 1831137 - 1831190
Alignment:
Q  273 tgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 326  Q
    |||||||||||||| ||||||||  ||| ||||||||||||| |||||| ||||    
T  1831137 tgagtttaacattggagaattttcgatccaaaagtttaaaatataattaattac 1831190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 54 - 328
Target Start/End: Complemental strand, 5120856 - 5120580
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    |||||||||||| |||| |||||||||||||||||   | ||| ||||||||||||||||||| ||| ||| || || |||||| |||||||||||||||    
T  5120856 ttattgatataaattatcaagtgtgctaaaattcacatttgaaggtacacttttaacaacagtttaacattgatattctatcattataatgaacttgtta 5120757  T
Q  154 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagg---agttcttgcatctatgatttctctaaaaagtctaactctaa-tt 249  Q
    || ||||||||   ||||||| ||||||||| ||||||||||||||||||| |   |||||||| |||||||||| || |||||| |||||| |||| ||    
T  5120756 gagatacttatatcatataaaaagaggaatggtgtacttctagcatacaaatgatcagttcttgtatctatgattcctttaaaaactctaacactaattt 5120657  T
Q  250 tgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 328  Q
    ||||||| |||||||||||||||| ||  |||||||| ||||||||  ||| |||||||||||||||||||| ||||||    
T  5120656 tgtatcatgtattattgttgttataag--taacattggagaatttttcatccaaaagtttaaaatttaattaattacgt 5120580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 132 - 334
Target Start/End: Complemental strand, 43171267 - 43171066
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    ||||||||||||||||||  |||| |||| |||   ||||||| | |||||||||||||||||||  |||||||||||||||| || ||||||| |||||    
T  43171267 tatcatcataatgaactt--tagagatacctataacatataaaaaaaggaatgatgtacttctagtgtacaaaggagttcttgtatttatgattcctcta 43171170  T
Q  232 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 330  Q
     |||||||||| ||||||| |||| | |||||||| |||||| ||||||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||     
T  43171169 caaagtctaacactaattttgtattatgtattatttttgttacgagtttaacattggagaattttgcatccaaaagtttaaaatttagttaattacgtgt 43171070  T
Q  331 tgat 334  Q
    ||||    
T  43171069 tgat 43171066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 23318327 - 23318168
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    ||||||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||   ||| ||| ||||| ||| ||||||||||||||||||    
T  23318327 ttattgatataagttattaagtgtgataaatttcaccattgaatgtacacttttaacaacaacataacattgattttgtataatcataatgaacttgtta 23318228  T
Q  154 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 214  Q
     | |||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  23318227 aagatacttatagtatataaaaagaggaatgatgtacttctaacatac-aaggagttcttg 23318168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 168 - 321
Target Start/End: Original strand, 26402144 - 26402295
Alignment:
Q  168 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaat-ttgtatcaagtattattg 266  Q
    ||||||| ||| ||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| |||| ||||| |||||||| ||||||||     
T  26402144 atataaaaagaagaatgatatacttctagaatacaaaggagttcttgtacctatgatttctctaaaaagtgtaacactaatgttgtatcatgtattatta 26402243  T
Q  267 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 321  Q
     |   |||||||||| |||| ||||||||  ||| ||||||||||||||||||||    
T  26402244 gt---atgagtttaaaattggagaattttccatccaaaagtttaaaatttaatta 26402295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 334
Target Start/End: Complemental strand, 14651656 - 14651489
Alignment:
Q  168 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc-taatttgtatcaagtattattg 266  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| | |  ||| |||||||||||||||    
T  14651656 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacattttttttatcaagtattattg 14651557  T
Q  267 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  14651556 ttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 14651489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 7850480 - 7850660
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  7850480 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 7850579  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  7850580 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 7850660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 38491310 - 38491392
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  38491310 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 38491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 33922322 - 33922247
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattt 129  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||| |||||| ||| ||| ||||    
T  33922322 ttattgacataagtgattaagtgtgctaaaattcatcattgaaggtacacttttaataacagtttaaaattgattt 33922247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 12783929 - 12783770
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  12783929 ttattgataaaagttattaagtgtgttaaaattcatcattgaaggtacacttttaacaacagtctaacattgattttgtatcatcataatgaacttgtta 12783830  T
Q  154 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 214  Q
    || |||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  12783829 gagatacttatagcatataaaaagaggaatgatgtacttctaggatac-aaggagttcttg 12783770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 68 - 285
Target Start/End: Complemental strand, 47397437 - 47397224
Alignment:
Q  68 tattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggt 167  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||| |||||| ||| ||||| ||||||     ||||||||||||| |||||||| |     
T  47397437 tattaagtgtgctaaaatttaccattgaaggtacacttttaacaaccgtctaacattgattttgtatcat-----tgaacttgttagagatacttatagc 47397343  T
Q  168 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattg 266  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||| ||||||||||| |||  |||| ||||||||| ||||| |||    
T  47397342 atataaagagaggaatgatgtccttctagcatataaaggagttattgtatttatgattcctctaaaaagtgtaaaactaattttgtatcatgtatttttg 47397243  T
Q  267 ttgttatgagtttaacatt 285  Q
    |||||||||||||||||||    
T  47397242 ttgttatgagtttaacatt 47397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 12028035 - 12028183
Alignment:
Q  180 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtt 278  Q
    |||||||||| |||| | ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  12028035 gaatgatgtatttcttgtatacaaaggagttcttgtatctatgattcctctaaaa-gtctaacactaattttgtatcatgtattattgttgttatgagtt 12028133  T
Q  279 taacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 328  Q
    |||||||| ||||||||| ||| |||||||||||||||| ||| ||||||    
T  12028134 taacattggagaattttgcatccaaaagtttaaaatttagttaattacgt 12028183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 5208592 - 5208454
Alignment:
Q  180 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 278  Q
    |||||||| |||||||| |||| || ||||||||| ||||||||||||||||||||||||||| |||| |||||||||  ||||| |||||||||| ||     
T  5208592 gaatgatgcacttctagtatacgaatgagttcttgtatctatgatttctctaaaaagtctaacactaattttgtatcatatattactgttgttatgggtc 5208493  T
Q  279 taacattgaagaattttgtatctaaaagtttaaaattta 317  Q
    |||||||| ||||||||| ||| ||||||||||||||||    
T  5208492 taacattgtagaattttgcatccaaaagtttaaaattta 5208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 48646236 - 48646355
Alignment:
Q  216 atctatgatttctctaaaaagtctaactctaatttg-tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaat 314  Q
    ||||||| || ||||||||| |||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  48646236 atctatggttcctctaaaaattctaacactaattttatatcatgtattattgttgttatgagtttaacattgaagaattttgcatctaaatgtttaaaat 48646335  T
Q  315 ttaattacttacgtgatgat 334  Q
    ||||||| || |||| ||||    
T  48646336 ttaattaattgcgtgttgat 48646355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 36296868 - 36297048
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  36296868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 36296967  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  36296968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 36297048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 42722403 - 42722583
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  42722403 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 42722502  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  42722503 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 42722583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 28945697 - 28945560
Alignment:
Q  200 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 296  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28945697 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28945598  T
Q  297 tatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  28945597 tatccaaatgtctaaaatttaattaattacgtgttgat 28945560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 26221954 - 26222036
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  26221954 tatcaagtattattgtttttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 26222036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 49228473 - 49228403
Alignment:
Q  251 gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 321  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  |   ||||||||||||| ||||||    
T  49228473 gtatcacgtattattgttgttatgagtttaacattggagaatttttcaatcaaaagtttaaaatgtaatta 49228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 35501460 - 35501355
Alignment:
Q  216 atctatgatttctctaaaaagtctaactctaatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatt 315  Q
    |||| ||||||||| |||||||||||| |   ||| |||||||||||||  |||||||| ||||||||||| |||||  |||||  |||||  |||||||    
T  35501460 atctttgatttctcgaaaaagtctaacacatttttttatcaagtattataattgttatgggtttaacattggagaatgatgtatacaaaagcctaaaatt 35501361  T
Q  316 taatta 321  Q
    ||||||    
T  35501360 taatta 35501355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 12783675 - 12783628
Alignment:
Q  203 aaggagttcttgcatctatgatttctctaaaaagtctaactctaattt 250  Q
    |||||||||||| |||||||||| |||||||||||||| | |||||||    
T  12783675 aaggagttcttgtatctatgattcctctaaaaagtctaccactaattt 12783628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 326
Target Start/End: Original strand, 47185206 - 47185401
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    |||||||| ||||||||||||||| |||||||| | ||||||| |||| |||||||||||| ||   |||||| ||||||||| |||||||||| |||||    
T  47185206 tatcatcacaatgaacttgttagagatacttatagcatataaaaagagaaatgatgtacttataatgtacaaaagagttcttgtatctatgattcctcta 47185305  T
Q  232 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 326  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||| ||| ||||    
T  47185306 aaaagtctaacactaattttgtatcatgaattattgttgttatgagtttaacattggagaattttgcatccaaatgtttaaaatttagttaattac 47185401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 6024587 - 6024505
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  6024587 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 6024505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 334
Target Start/End: Complemental strand, 23044825 - 23044645
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  23044825 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 23044726  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  23044725 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 23044645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 31884842 - 31884705
Alignment:
Q  200 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 296  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  31884842 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 31884743  T
Q  297 tatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  31884742 tatccaaatgtctaaaatttaattaattacgtgttgat 31884705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 44879476 - 44879529
Alignment:
Q  198 atacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg 251  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  44879476 atacaaaggagttcttgtatctatgattcctctaaaaagtctaacactaatttg 44879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 44879802 - 44879878
Alignment:
Q  258 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||| ||||||||||||||| |||| ||||||| | ||||| ||| |||||||||| ||| ||||||| ||||    
T  44879802 gtattattattgttatgagtttaatattggagaatttggcatctagaagattaaaatttagttaattacgtgttgat 44879878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 132 - 334
Target Start/End: Original strand, 25621679 - 25621882
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    |||||| |||||||| |||||||| |||  |||   ||| ||| |||||||||||||||||| || ||||||| ||||| ||| || ||||||| |||||    
T  25621679 tatcattataatgaagttgttagagatatgtatatcatagaaaaagaggaatgatgtacttccagtatacaaatgagttattgtatttatgattcctcta 25621778  T
Q  232 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 330  Q
    ||| ||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||  || ||||||||||||||||| || |||||||     
T  25621779 aaaggtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggagaattttgcttccaaaagtttaaaatttaactaattacgtgt 25621878  T
Q  331 tgat 334  Q
    ||||    
T  25621879 tgat 25621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 132 - 317
Target Start/End: Original strand, 14904265 - 14904451
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    |||||||||||||||||||||||| ||||||||   ||||||| |||||| |||| ||||| ||| ||| ||| ||||| |||  |||||||||  ||||    
T  14904265 tatcatcataatgaacttgttagagatacttataacatataaaaagaggagtgatatacttatagtatataaatgagttattgtttctatgattcttcta 14904364  T
Q  232 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 317  Q
    |||| ||||||  ||| ||||||||| ||||||||||||||| ||| ||||||||| | ||||||| ||  ||||||||||||||||    
T  14904365 aaaaatctaacaataattttgtatcatgtattattgttgttaggaggttaacattggataattttgcattcaaaagtttaaaattta 14904451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 6883446 - 6883607
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    |||||||||||| |||||||||||||||||     ||| |||   ||| ||||||||||| ||| || ||| ||||| ||||||||||||||||||||||    
T  6883446 ttattgatataaattattaagtgtgctaaa-----tcaaaga---tacgcttttaacaacggtcgaacattgattttatatcatcataatgaacttgtta 6883537  T
Q  154 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatga 223  Q
    || |||||| | | ||||||| ||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  6883538 gagatacttgtagcatataaaaagaggaatgatgtacttttagtatacaaatgagttcttgtatctatga 6883607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 25415890 - 25415782
Alignment:
Q  54 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 153  Q
    |||||||||||| || |||||||| |||||||||||| | ||| ||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  25415890 ttattgatataaatttttaagtgtactaaaattcatctttgaaggtacacttttaacaacaatctaacattgattttgtatcatcataatgaacttgtta 25415791  T
Q  154 gaaatactt 162  Q
    || ||||||    
T  25415790 gagatactt 25415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 132 - 321
Target Start/End: Complemental strand, 38422512 - 38422322
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 231  Q
    |||||||| |||||||||| |||| |||||| | | ||||||| ||||||||||||||||| || |||| ||||||||||| | |||| |||||  ||||    
T  38422512 tatcatcacaatgaacttgatagagatacttgtagcatataaaaagaggaatgatgtacttgtaacatataaaggagttctagtatctttgattcttcta 38422413  T
Q  232 aaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 321  Q
    ||||||||||| ||   ||||||||||||| |||| |||||||| |||| | |||| |||| | || ||| |||||  |||||||||||||    
T  38422412 aaaagtctaacactggttttgtatcaagtaatattattgttatgggtttgatattggagaagtctgcatccaaaaggctaaaatttaatta 38422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 334
Target Start/End: Complemental strand, 90248 - 90080
Alignment:
Q  168 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 265  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||    
T  90248 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacatttttttttatcaagtattatt 90149  T
Q  266 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  90148 gttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 90080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 281
Target Start/End: Complemental strand, 43672906 - 43672737
Alignment:
Q  113 cagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttct 212  Q
    |||||||| ||| || || |||||||| |||||| ||| |||||||||||   | ||||||| ||||||||||||||||| || |||| |||||||||      
T  43672906 cagtctaacattgatattgtatcatcacaatgaatttgatagaaatacttgcagcatataaaaagaggaatgatgtacttgtaacatataaaggagttac 43672807  T
Q  213 tgcatctatgatttctctaaaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaa 281  Q
     | |||| ||||| |||||||||||||||  || | ||||||||||||||||||| ||||||| ||||||    
T  43672806 ggtatctttgattcctctaaaaagtctaatactgattttgtatcaagtattattgatgttatgggtttaa 43672737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 2565866 - 2565948
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2565866 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2565948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 18781006 - 18780924
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  18781006 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 18780924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 334
Target Start/End: Original strand, 19678245 - 19678382
Alignment:
Q  200 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 296  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  19678245 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 19678344  T
Q  297 tatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  19678345 tatccaaatgtctaaaatttaattaattacgtgttgat 19678382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 6271437 - 6271355
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6271437 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6271355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 29303342 - 29303522
Alignment:
Q  158 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 253  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  29303342 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 29303441  T
Q  254 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  29303442 tcaagtattattgttgttatgtgtttagaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 29303522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 45277333 - 45277251
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  45277333 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 45277251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 10023326 - 10023418
Alignment:
Q  62 ataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 154  Q
    ||||||||| ||||||||||||||||  ||| ||| |  ||||||||||| || ||||| ||| ||||| |||||||||||||||||||||||    
T  10023326 ataagttatgaagtgtgctaaaattctccattgaatgcgcacttttaacatcaatctaacattgattttgtatcatcataatgaacttgttag 10023418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 7880190 - 7880108
Alignment:
Q  252 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || |||||||||| || ||||||| ||||    
T  7880190 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaactaattacgtgttgat 7880108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 25415567 - 25415498
Alignment:
Q  248 tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 317  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||||||  ||| |||| |||||||||||    
T  25415567 tttgtatcatgtattattgttgttatgagcttaacattagagaattttccatcaaaaactttaaaattta 25415498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 6883603 - 6883666
Alignment:
Q  271 tatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    |||||||||||||||| |||||||| |||| |||| ||||||||||||||| ||| ||| ||||    
T  6883603 tatgagtttaacattggagaattttctatccaaaaatttaaaatttaattaattatgtgttgat 6883666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 331
Target Start/End: Original strand, 903 - 1020
Alignment:
Q  215 catctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaa 313  Q
    ||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||  |||||||| ||| || ||||||| |    
T  903 catctatgattcctctaaaaagtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggtgaattttgcatccaatagtttaata 1002  T
Q  314 tttaattacttacgtgat 331  Q
    |||| ||| |||| ||||    
T  1003 tttagttaattacatgat 1020  T

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Target: scaffold0178 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 1104 - 1015
Alignment:
Q  132 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctat 221  Q
    |||||||||||||||||||||||| ||| |||| | ||||||| ||||||| ||||||||||||| ||||||| ||||||||| ||||||    
T  1104 tatcatcataatgaacttgttagagataattatagcatataaaaagaggaacgatgtacttctagtatacaaaagagttcttgtatctat 1015  T

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Target: scaffold0743 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 2635 - 2557
Alignment:
Q  256 aagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 334  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| ||| || ||||||||||||| ||| ||| ||||    
T  2635 aagtattattgttgttatgtgtttaacattggataattttgtatccaaatgtctaaaatttaattaattatgtgttgat 2557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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