View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10365_high_2 (Length: 556)
Name: NF10365_high_2
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 329 - 526
Target Start/End: Original strand, 50648049 - 50648248
Alignment:
| Q |
329 |
ttgaaaacagcaaattgatgaaaaaccaaaagag--aggaaaaccttatcgttgacaaattgatgaactgttaagctaaaaccaagacatgaactgttaa |
426 |
Q |
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| T |
50648049 |
ttgaaaacagcaaattgatgaaaaaccaaaagagagaggaaaaccttatcgttgacaaattgatgaactgttaagctaaaaccaagacatgaactgttaa |
50648148 |
T |
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| Q |
427 |
ccttgtcgttttcaatttactggagctgctgcggatggaacgcgacagagggttgaaatgggtaccgagaaggaggttgttggttggtgactggagatgg |
526 |
Q |
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| T |
50648149 |
ccttgtcgttttcaatttactggagctgctgcggatcgaacgcgacagagggttgaaatgggtaccgagaaggaggttgttggttggtgactggagatgg |
50648248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 363 - 526
Target Start/End: Original strand, 31532087 - 31532256
Alignment:
| Q |
363 |
aggaaaaccttatcgttgacaaattgatgaactgttaagctaaaaccaagacatgaactgttaaccttgtcgttttcaatttactggagctgctgcggat |
462 |
Q |
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| T |
31532087 |
aggaaaacattatcgttgacaaattgttgaactgttaagctaaaaccgaggtatgaactattaacgttatcgttttcaatttactggagctgttgcggat |
31532186 |
T |
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| Q |
463 |
ggaacgcgacagagggttgaaatgggtaccg------agaaggaggttgttggttggtgactggagatgg |
526 |
Q |
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|| | |||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
31532187 |
cgatcacgacggagggttgaaatgggtaccgagaataagaaggaggttgttggttggtgcctggatatgg |
31532256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 31531836 - 31531952
Alignment:
| Q |
74 |
ggatgggcaaagttcagtttagac-caaaactgtgtctgaac-----cgaactgaactgtttttcaattcgtttgaactgaacc-aaactataatggaac |
166 |
Q |
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| T |
31531836 |
ggatgggcaaagttcaatttagactcaaaattgtgtctgaaccgaaccgaactgaactgtttttcagttcgtttgaactgaaccaaaaccataatggaac |
31531935 |
T |
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| Q |
167 |
aattcgaactgaaccaa |
183 |
Q |
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| T |
31531936 |
aattcgaactgaaccaa |
31531952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 31531954 - 31532008
Alignment:
| Q |
206 |
ttaatatgaattacagcaccaacatatcgttttcaatttactggttctgcatatatg |
262 |
Q |
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| T |
31531954 |
ttaatatgaatcacagtaccaacat--cgtcttcaatttaatggttctgcatatatg |
31532008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 11155016 - 11155072
Alignment:
| Q |
74 |
ggatgggcaaagttcagtttaga-ccaaaactgtgtctgaaccgaactgaactgttt |
129 |
Q |
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| T |
11155016 |
ggatgggcaaagttcagttcacatccaaaactgtgtttgaactgaaccgaactgttt |
11155072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 52421785 - 52421835
Alignment:
| Q |
74 |
ggatgggcaaagttcagtttagaccaaaactgtgtctgaaccgaactgaac |
124 |
Q |
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| T |
52421785 |
ggatgggcaaagttcagtttagaccaaaactgtgtcaaaactgaactgaac |
52421835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 42851519 - 42851554
Alignment:
| Q |
74 |
ggatgggcaaagttcagtttagaccaaaactgtgtc |
109 |
Q |
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| T |
42851519 |
ggatgggcaaagttcagtttagaccaagactgtgtc |
42851554 |
T |
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