View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10365_high_23 (Length: 344)
Name: NF10365_high_23
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_23 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 41382355 - 41382020
Alignment:
| Q |
9 |
gattatacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataat |
108 |
Q |
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| T |
41382355 |
gattatacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataat |
41382256 |
T |
|
| Q |
109 |
gaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtca |
208 |
Q |
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| T |
41382255 |
gaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtca |
41382156 |
T |
|
| Q |
209 |
ccggaggtgcatcattgcaaaaatttcacaatacactgtgtccaagttgcaaaccaatcaaattgaattttttcattatgatctttgcctctgctcaatt |
308 |
Q |
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| T |
41382155 |
ccggaggtgcatcattgcaaaaatttcacaatacagtttgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatt |
41382056 |
T |
|
| Q |
309 |
tgtattgtgtcatctaccaaacctcaactccctttc |
344 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
41382055 |
tgtattgtgtcatctacccaacctcaactccctttc |
41382020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 43853134 - 43853201
Alignment:
| Q |
25 |
tcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacg |
92 |
Q |
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| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacg |
43853201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 8041735 - 8042067
Alignment:
| Q |
12 |
tatacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
111 |
Q |
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||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8041735 |
tatacttgtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaa |
8041834 |
T |
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| Q |
112 |
ttgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
211 |
Q |
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|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |
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| T |
8041835 |
ttagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccg |
8041934 |
T |
|
| Q |
212 |
gaggtgcatcattgcaaaaatttcacaatacactgtgtccaagttgcaaaccaatcaaattgaattttttcattatgatctttgcctctgctcaatttgt |
311 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
8041935 |
gaggtgcatcattgcaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgt |
8042034 |
T |
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| Q |
312 |
attgtgtcatctaccaaacctcaactccctttc |
344 |
Q |
| |
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||||| ||||||||||||| | |||||| |||| |
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| T |
8042035 |
attgtctcatctaccaaacttgaactccatttc |
8042067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 344
Target Start/End: Complemental strand, 7971953 - 7971621
Alignment:
| Q |
12 |
tatacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
111 |
Q |
| |
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||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7971953 |
tatacttgttctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaa |
7971854 |
T |
|
| Q |
112 |
ttgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
211 |
Q |
| |
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|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |
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| T |
7971853 |
ttagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccg |
7971754 |
T |
|
| Q |
212 |
gaggtgcatcattgcaaaaatttcacaatacactgtgtccaagttgcaaaccaatcaaattgaattttttcattatgatctttgcctctgctcaatttgt |
311 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
7971753 |
gaggtgcatcattgcaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgt |
7971654 |
T |
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| Q |
312 |
attgtgtcatctaccaaacctcaactccctttc |
344 |
Q |
| |
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||||| ||||||||||||| | |||||| |||| |
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| T |
7971653 |
attgtctcatctaccaaacttgaactccatttc |
7971621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 8031856 - 8032188
Alignment:
| Q |
12 |
tatacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
111 |
Q |
| |
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||||||| || | ||||||| ||||||||| || || |||||||||||||||||||||||||| ||| |||||||||||||| |||||| ||| ||||| |
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| T |
8031856 |
tatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaa |
8031955 |
T |
|
| Q |
112 |
ttgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
211 |
Q |
| |
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|| || |||||||||||||| ||||||||||| | | |||||| | |||||||||||| | ||| ||||||||| |||||||||||||||||||||| |
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| T |
8031956 |
ttaggtcaacatgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccg |
8032055 |
T |
|
| Q |
212 |
gaggtgcatcattgcaaaaatttcacaatacactgtgtccaagttgcaaaccaatcaaattgaattttttcattatgatctttgcctctgctcaatttgt |
311 |
Q |
| |
|
||||||||||||||| || || ||||||||| ||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
8032056 |
gaggtgcatcattgcggaagttccacaatacagtgtgttcaagttgcaaaaatatcaaattgacctatttcattatgatctttgcctctgctcaatttgt |
8032155 |
T |
|
| Q |
312 |
attgtgtcatctaccaaacctcaactccctttc |
344 |
Q |
| |
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||||||||||||||||||| | |||||| |||| |
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| T |
8032156 |
attgtgtcatctaccaaacttgaactccatttc |
8032188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 7979511 - 7979303
Alignment:
| Q |
22 |
ctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaac |
121 |
Q |
| |
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||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||| || |||| |
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| T |
7979511 |
ctttcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaac |
7979412 |
T |
|
| Q |
122 |
atgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatc |
221 |
Q |
| |
|
|||| ||||| |||| ||||| | | |||||| |||||||||||||||||||| || |||| || ||||||| || |||||||| || || |||| |
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| T |
7979411 |
atgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatc |
7979312 |
T |
|
| Q |
222 |
attgcaaaa |
230 |
Q |
| |
|
||||||||| |
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| T |
7979311 |
attgcaaaa |
7979303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 12 - 344
Target Start/End: Complemental strand, 3476 - 3144
Alignment:
| Q |
12 |
tatacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
111 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||||||| |||||| || ||||| |
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| T |
3476 |
tatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaa |
3377 |
T |
|
| Q |
112 |
ttgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
211 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| | | |||||| |||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||| |
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|
| T |
3376 |
ctgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccg |
3277 |
T |
|
| Q |
212 |
gaggtgcatcattgcaaaaatttcacaatacactgtgtccaagttgcaaaccaatcaaattgaattttttcattatgatctttgcctctgctcaatttgt |
311 |
Q |
| |
|
||||||||||| ||| ||| || ||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
3276 |
gaggtgcatcactgcgaaagttccacaatacagtgtgtccaagttgcaaaaatatcaaattgacatatttcattatgatctttgcctctgctcaatttgt |
3177 |
T |
|
| Q |
312 |
attgtgtcatctaccaaacctcaactccctttc |
344 |
Q |
| |
|
||||||||||||||||||| | |||||| |||| |
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| T |
3176 |
attgtgtcatctaccaaacttgaactccatttc |
3144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 14198910 - 14198614
Alignment:
| Q |
20 |
tcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggcca |
119 |
Q |
| |
|
|||| |||||| ||||||| | ||||| || ||||||||||||||||||||||| ||||| || || |||||| | |||| |||| ||||| |||| || |
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| T |
14198910 |
tcctctcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtca |
14198811 |
T |
|
| Q |
120 |
acatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgca |
219 |
Q |
| |
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| |||| |||||||||||||| || ||| ||||| |||| ||||||||| | || |||| || || |||||||||||||||| |||||||| | |
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| T |
14198810 |
atatgcttttggtgaaaagttgggtctgtatattgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggaggaaaa |
14198711 |
T |
|
| Q |
220 |
tcattgcaaaaatttcacaatacactgtgtccaagttgcaaaccaatcaaattgaattttttcattatgatctttgcctctgctcaatttgtattgt |
316 |
Q |
| |
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|| ||||| || ||||| |||| ||||| | ||||||| ||||||||||| || ||| || ||||| |||||||||| ||| ||||| |||| |
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| T |
14198710 |
tctttgcagaagtttcatgataccgtgtgttccgattgcaaaaaaatcaaattgacttattttataatgatttttgcctctgttcactttgtcttgt |
14198614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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